miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 3' -56.3 NC_005357.1 + 38018 1.1 0.000425
Target:  5'- gACCUACGACUGCCGCACGCUCAAGGCc -3'
miRNA:   3'- -UGGAUGCUGACGGCGUGCGAGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 14997 0.79 0.083244
Target:  5'- gGCCUGCGGCcGCCGgGCGCggugCGccAGGCg -3'
miRNA:   3'- -UGGAUGCUGaCGGCgUGCGa---GU--UCCG- -5'
26611 3' -56.3 NC_005357.1 + 18686 0.77 0.124553
Target:  5'- cGCCggcaugGCG-CUGCUGCGCGCcacCGAGGCa -3'
miRNA:   3'- -UGGa-----UGCuGACGGCGUGCGa--GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 14846 0.77 0.12814
Target:  5'- uGCCguugGCGGCcagcGCCGCACGCU--GGGCg -3'
miRNA:   3'- -UGGa---UGCUGa---CGGCGUGCGAguUCCG- -5'
26611 3' -56.3 NC_005357.1 + 41319 0.76 0.151736
Target:  5'- gGCCgaugcGCGACaUGCCGCGCGacacggcCAAGGCa -3'
miRNA:   3'- -UGGa----UGCUG-ACGGCGUGCga-----GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 24163 0.75 0.156034
Target:  5'- cGCCU-CGACgGCUGCGCGCUUc-GGCg -3'
miRNA:   3'- -UGGAuGCUGaCGGCGUGCGAGuuCCG- -5'
26611 3' -56.3 NC_005357.1 + 17124 0.75 0.169594
Target:  5'- cGCCggugGCagGGCcgGCCGCACGacCUCAAGGCa -3'
miRNA:   3'- -UGGa---UG--CUGa-CGGCGUGC--GAGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 19812 0.74 0.179212
Target:  5'- -aCUACcuGCUGCCGCGCGCg--GGGCg -3'
miRNA:   3'- ugGAUGc-UGACGGCGUGCGaguUCCG- -5'
26611 3' -56.3 NC_005357.1 + 19246 0.74 0.1842
Target:  5'- gACCUGCuGCUGUCGCACcaGCagGGGGCc -3'
miRNA:   3'- -UGGAUGcUGACGGCGUG--CGagUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 26357 0.74 0.1842
Target:  5'- cAUCUACGGC-GCCGCGCGCggc-GGCc -3'
miRNA:   3'- -UGGAUGCUGaCGGCGUGCGaguuCCG- -5'
26611 3' -56.3 NC_005357.1 + 32921 0.74 0.205394
Target:  5'- gGCCUgcACGGCUGCUGUucgGC-CAGGGCg -3'
miRNA:   3'- -UGGA--UGCUGACGGCGug-CGaGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 35072 0.73 0.211013
Target:  5'- gACgaACGAC-GCCGaggucgaggcCGCGCUCAAGGCc -3'
miRNA:   3'- -UGgaUGCUGaCGGC----------GUGCGAGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 7715 0.73 0.222648
Target:  5'- uGCCgAUGaACUGCagCGCACGCUCGGcGGCc -3'
miRNA:   3'- -UGGaUGC-UGACG--GCGUGCGAGUU-CCG- -5'
26611 3' -56.3 NC_005357.1 + 19329 0.73 0.241119
Target:  5'- cGCCguggGCG-CcGCCGUugGCgUCGGGGCg -3'
miRNA:   3'- -UGGa---UGCuGaCGGCGugCG-AGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 37929 0.72 0.247555
Target:  5'- cGCCUGUGGC-GCCGCGCGCaUCc-GGCg -3'
miRNA:   3'- -UGGAUGCUGaCGGCGUGCG-AGuuCCG- -5'
26611 3' -56.3 NC_005357.1 + 12950 0.71 0.281879
Target:  5'- gACCgacGCGGaacugGCCGCGCGCUCGucGCc -3'
miRNA:   3'- -UGGa--UGCUga---CGGCGUGCGAGUucCG- -5'
26611 3' -56.3 NC_005357.1 + 16137 0.71 0.288444
Target:  5'- gACgUAgGACUgcgGCCGCACGCUgAuggugguGGGCg -3'
miRNA:   3'- -UGgAUgCUGA---CGGCGUGCGAgU-------UCCG- -5'
26611 3' -56.3 NC_005357.1 + 39027 0.71 0.304228
Target:  5'- cGCCUACGAaaaugGCCGCGugugggUGCUCAAGa- -3'
miRNA:   3'- -UGGAUGCUga---CGGCGU------GCGAGUUCcg -5'
26611 3' -56.3 NC_005357.1 + 29103 0.71 0.304228
Target:  5'- gGCCcgUGCGggacuuGCUGCCGguCACGCgcgCGAGGCc -3'
miRNA:   3'- -UGG--AUGC------UGACGGC--GUGCGa--GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 34311 0.71 0.311975
Target:  5'- aACCaACGcCgGCCGCGCGgUgCAGGGCc -3'
miRNA:   3'- -UGGaUGCuGaCGGCGUGCgA-GUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.