miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 3' -56.3 NC_005357.1 + 165 0.66 0.550466
Target:  5'- uGCCcaa-GCUGCCGCGCGCagAAugccGGCg -3'
miRNA:   3'- -UGGaugcUGACGGCGUGCGagUU----CCG- -5'
26611 3' -56.3 NC_005357.1 + 444 0.66 0.539575
Target:  5'- uCgUugGGCUGCUGCGCggccaGCUUGcGGGCg -3'
miRNA:   3'- uGgAugCUGACGGCGUG-----CGAGU-UCCG- -5'
26611 3' -56.3 NC_005357.1 + 4025 0.68 0.455653
Target:  5'- cACCaGCGucaUGCCGCGCgGgUCGAGcGCa -3'
miRNA:   3'- -UGGaUGCug-ACGGCGUG-CgAGUUC-CG- -5'
26611 3' -56.3 NC_005357.1 + 4549 0.66 0.550466
Target:  5'- gUCUugGGCUugagGCCGaaguCGC-CGAGGCg -3'
miRNA:   3'- uGGAugCUGA----CGGCgu--GCGaGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 4631 0.68 0.465776
Target:  5'- gGCCcGCG-CUGCCGCAgGgUC--GGCa -3'
miRNA:   3'- -UGGaUGCuGACGGCGUgCgAGuuCCG- -5'
26611 3' -56.3 NC_005357.1 + 4936 0.69 0.406912
Target:  5'- uGCCcGCGACgGuCUGCACGUcugCGAGGUu -3'
miRNA:   3'- -UGGaUGCUGaC-GGCGUGCGa--GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 5286 0.69 0.406912
Target:  5'- aGCgU-CGAUUGCUGCAUGUcuggcaggUCGAGGCc -3'
miRNA:   3'- -UGgAuGCUGACGGCGUGCG--------AGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 7155 0.69 0.388351
Target:  5'- gGCCUggAUGACcaggGCCGgGCGCUUgucggauucgGGGGCg -3'
miRNA:   3'- -UGGA--UGCUGa---CGGCgUGCGAG----------UUCCG- -5'
26611 3' -56.3 NC_005357.1 + 7514 0.66 0.539575
Target:  5'- uGCCgaggAUGGCguugucuaCCGUGCGCUCGGcGGCg -3'
miRNA:   3'- -UGGa---UGCUGac------GGCGUGCGAGUU-CCG- -5'
26611 3' -56.3 NC_005357.1 + 7715 0.73 0.222648
Target:  5'- uGCCgAUGaACUGCagCGCACGCUCGGcGGCc -3'
miRNA:   3'- -UGGaUGC-UGACG--GCGUGCGAGUU-CCG- -5'
26611 3' -56.3 NC_005357.1 + 8406 0.68 0.435771
Target:  5'- aGCCaguCGGCcaggGCCGUGCGCUUgucuacggccuuGAGGCu -3'
miRNA:   3'- -UGGau-GCUGa---CGGCGUGCGAG------------UUCCG- -5'
26611 3' -56.3 NC_005357.1 + 8472 0.68 0.455653
Target:  5'- gGCCUGCGA-UGCCGCA-GC-CGAcGCg -3'
miRNA:   3'- -UGGAUGCUgACGGCGUgCGaGUUcCG- -5'
26611 3' -56.3 NC_005357.1 + 8677 0.66 0.572441
Target:  5'- ---aGCGGCUGCUGCGcCGCcCAGGuGUg -3'
miRNA:   3'- uggaUGCUGACGGCGU-GCGaGUUC-CG- -5'
26611 3' -56.3 NC_005357.1 + 8903 0.66 0.561425
Target:  5'- ---aAUGGCgcuaucgGCgGCGCGCUCGAuGGCu -3'
miRNA:   3'- uggaUGCUGa------CGgCGUGCGAGUU-CCG- -5'
26611 3' -56.3 NC_005357.1 + 9202 0.68 0.476014
Target:  5'- gGCCUgcucgGCGGCgcGgCGCACGUUCugcGGCg -3'
miRNA:   3'- -UGGA-----UGCUGa-CgGCGUGCGAGuu-CCG- -5'
26611 3' -56.3 NC_005357.1 + 11187 0.68 0.44565
Target:  5'- cGCC--CGGCUcguagcuggGCCGCGCGC-CGGGGUu -3'
miRNA:   3'- -UGGauGCUGA---------CGGCGUGCGaGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 11492 0.66 0.536321
Target:  5'- cGCCUGCGACa-CCGCaaagggcagcgccuGCGCUggcgUGAGGCc -3'
miRNA:   3'- -UGGAUGCUGacGGCG--------------UGCGA----GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 12334 0.67 0.518021
Target:  5'- cGCCUGgGACaaggGCCGUgGCGC-CcGGGCg -3'
miRNA:   3'- -UGGAUgCUGa---CGGCG-UGCGaGuUCCG- -5'
26611 3' -56.3 NC_005357.1 + 12950 0.71 0.281879
Target:  5'- gACCgacGCGGaacugGCCGCGCGCUCGucGCc -3'
miRNA:   3'- -UGGa--UGCUga---CGGCGUGCGAGUucCG- -5'
26611 3' -56.3 NC_005357.1 + 13613 0.66 0.594618
Target:  5'- aACCcgACGACgGCgCGCugGCugcUCAAgaucGGCa -3'
miRNA:   3'- -UGGa-UGCUGaCG-GCGugCG---AGUU----CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.