Results 21 - 40 of 78 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 13739 | 0.69 | 0.379281 |
Target: 5'- gACCUugugaACGACgugGCgCGcCGCGCUggCGAGGCc -3' miRNA: 3'- -UGGA-----UGCUGa--CG-GC-GUGCGA--GUUCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 14328 | 0.66 | 0.583509 |
Target: 5'- cGCCUugGcugaACUGCCgggccuGCugGUUCGcGGUg -3' miRNA: 3'- -UGGAugC----UGACGG------CGugCGAGUuCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 14846 | 0.77 | 0.12814 |
Target: 5'- uGCCguugGCGGCcagcGCCGCACGCU--GGGCg -3' miRNA: 3'- -UGGa---UGCUGa---CGGCGUGCGAguUCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 14997 | 0.79 | 0.083244 |
Target: 5'- gGCCUGCGGCcGCCGgGCGCggugCGccAGGCg -3' miRNA: 3'- -UGGAUGCUGaCGGCgUGCGa---GU--UCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 16107 | 0.68 | 0.476014 |
Target: 5'- gACC-ACGACcgGCUGCACG-UCGGuGGCc -3' miRNA: 3'- -UGGaUGCUGa-CGGCGUGCgAGUU-CCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 16137 | 0.71 | 0.288444 |
Target: 5'- gACgUAgGACUgcgGCCGCACGCUgAuggugguGGGCg -3' miRNA: 3'- -UGgAUgCUGA---CGGCGUGCGAgU-------UCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 16732 | 0.66 | 0.539575 |
Target: 5'- cCCUuguuguuCGACgugGCgGuCACGCUCGuGGGCg -3' miRNA: 3'- uGGAu------GCUGa--CGgC-GUGCGAGU-UCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 17124 | 0.75 | 0.169594 |
Target: 5'- cGCCggugGCagGGCcgGCCGCACGacCUCAAGGCa -3' miRNA: 3'- -UGGa---UG--CUGa-CGGCGUGC--GAGUUCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 18137 | 0.67 | 0.507372 |
Target: 5'- gACCUcaccgcccccACGuggucACUGuCCGgcgcCACGCUCAAGGUg -3' miRNA: 3'- -UGGA----------UGC-----UGAC-GGC----GUGCGAGUUCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 18238 | 0.69 | 0.382892 |
Target: 5'- cGCCUACGuGCUcgcgcucauggacacGCCgaaGCGCGCagccgUCGAGGCg -3' miRNA: 3'- -UGGAUGC-UGA---------------CGG---CGUGCG-----AGUUCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 18686 | 0.77 | 0.124553 |
Target: 5'- cGCCggcaugGCG-CUGCUGCGCGCcacCGAGGCa -3' miRNA: 3'- -UGGa-----UGCuGACGGCGUGCGa--GUUCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 19008 | 0.69 | 0.370355 |
Target: 5'- gGCCgGCGucgcACUGaCCgGCGCGCUCAucaAGGUa -3' miRNA: 3'- -UGGaUGC----UGAC-GG-CGUGCGAGU---UCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 19246 | 0.74 | 0.1842 |
Target: 5'- gACCUGCuGCUGUCGCACcaGCagGGGGCc -3' miRNA: 3'- -UGGAUGcUGACGGCGUG--CGagUUCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 19329 | 0.73 | 0.241119 |
Target: 5'- cGCCguggGCG-CcGCCGUugGCgUCGGGGCg -3' miRNA: 3'- -UGGa---UGCuGaCGGCGugCG-AGUUCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 19726 | 0.71 | 0.31987 |
Target: 5'- aACCgaGCGcaaACUGCUGCuuucGCGCUgGGGGCa -3' miRNA: 3'- -UGGa-UGC---UGACGGCG----UGCGAgUUCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 19812 | 0.74 | 0.179212 |
Target: 5'- -aCUACcuGCUGCCGCGCGCg--GGGCg -3' miRNA: 3'- ugGAUGc-UGACGGCGUGCGaguUCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 20305 | 0.66 | 0.572441 |
Target: 5'- aGCCUGuuCGACcGCgGCGCGCUgGaacaguGGGUu -3' miRNA: 3'- -UGGAU--GCUGaCGgCGUGCGAgU------UCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 20737 | 0.67 | 0.507372 |
Target: 5'- aACCU-CGAcCUGUCGCAC-CUUcuGGCu -3' miRNA: 3'- -UGGAuGCU-GACGGCGUGcGAGuuCCG- -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 21822 | 0.7 | 0.352937 |
Target: 5'- gACCUGCGAC-GCCGcCugGCg-AAGGa -3' miRNA: 3'- -UGGAUGCUGaCGGC-GugCGagUUCCg -5' |
|||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 23504 | 0.69 | 0.416398 |
Target: 5'- gACCUGCGGCaguuccGCgaGCGCGCcuUCcAGGCg -3' miRNA: 3'- -UGGAUGCUGa-----CGg-CGUGCG--AGuUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home