miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 3' -56.3 NC_005357.1 + 41923 0.66 0.583509
Target:  5'- cGCCUGCaaGCcGCCGCGgcgcaguaUGCUgcCGAGGCa -3'
miRNA:   3'- -UGGAUGc-UGaCGGCGU--------GCGA--GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 41319 0.76 0.151736
Target:  5'- gGCCgaugcGCGACaUGCCGCGCGacacggcCAAGGCa -3'
miRNA:   3'- -UGGa----UGCUG-ACGGCGUGCga-----GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 40456 0.69 0.380182
Target:  5'- cGCCUACaGCgugccuucccccaggGCCGCGCGCUCGAc-- -3'
miRNA:   3'- -UGGAUGcUGa--------------CGGCGUGCGAGUUccg -5'
26611 3' -56.3 NC_005357.1 + 40026 0.68 0.476014
Target:  5'- cACCUACGcUUGCCGCccugacaaggguACGCaCGcGGGCg -3'
miRNA:   3'- -UGGAUGCuGACGGCG------------UGCGaGU-UCCG- -5'
26611 3' -56.3 NC_005357.1 + 39027 0.71 0.304228
Target:  5'- cGCCUACGAaaaugGCCGCGugugggUGCUCAAGa- -3'
miRNA:   3'- -UGGAUGCUga---CGGCGU------GCGAGUUCcg -5'
26611 3' -56.3 NC_005357.1 + 38226 0.66 0.583509
Target:  5'- aGCC-GCGACgUGCuCGCGgccaacaugccCGCcaUCGAGGCg -3'
miRNA:   3'- -UGGaUGCUG-ACG-GCGU-----------GCG--AGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 38018 1.1 0.000425
Target:  5'- gACCUACGACUGCCGCACGCUCAAGGCc -3'
miRNA:   3'- -UGGAUGCUGACGGCGUGCGAGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 37929 0.72 0.247555
Target:  5'- cGCCUGUGGC-GCCGCGCGCaUCc-GGCg -3'
miRNA:   3'- -UGGAUGCUGaCGGCGUGCG-AGuuCCG- -5'
26611 3' -56.3 NC_005357.1 + 36673 0.68 0.435771
Target:  5'- gGCCcugGCGcacucGCUGCCcgGCGCGCU--GGGCg -3'
miRNA:   3'- -UGGa--UGC-----UGACGG--CGUGCGAguUCCG- -5'
26611 3' -56.3 NC_005357.1 + 36417 0.68 0.465776
Target:  5'- uGCCUAUccaGAacgGCaCGCACGCUUAcgccgagaAGGCa -3'
miRNA:   3'- -UGGAUG---CUga-CG-GCGUGCGAGU--------UCCG- -5'
26611 3' -56.3 NC_005357.1 + 36083 0.66 0.594618
Target:  5'- gGCCUuCGg--GCCGgGCGCUUuggcuGGGGCg -3'
miRNA:   3'- -UGGAuGCugaCGGCgUGCGAG-----UUCCG- -5'
26611 3' -56.3 NC_005357.1 + 35585 0.7 0.344448
Target:  5'- gGCCUACGAaaagGCCGU-CGC-CGAGGg -3'
miRNA:   3'- -UGGAUGCUga--CGGCGuGCGaGUUCCg -5'
26611 3' -56.3 NC_005357.1 + 35361 0.69 0.397562
Target:  5'- aGCCUguucaaACGAC-GCUGC-CGCcCGAGGCc -3'
miRNA:   3'- -UGGA------UGCUGaCGGCGuGCGaGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 35072 0.73 0.211013
Target:  5'- gACgaACGAC-GCCGaggucgaggcCGCGCUCAAGGCc -3'
miRNA:   3'- -UGgaUGCUGaCGGC----------GUGCGAGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 34311 0.71 0.311975
Target:  5'- aACCaACGcCgGCCGCGCGgUgCAGGGCc -3'
miRNA:   3'- -UGGaUGCuGaCGGCGUGCgA-GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 34205 0.67 0.528757
Target:  5'- uGCUgACGGCcGCCGaccaGCGCgacuaCGAGGCc -3'
miRNA:   3'- -UGGaUGCUGaCGGCg---UGCGa----GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 33896 0.67 0.522305
Target:  5'- gGCCUGCGAUaccugggcaaguucGCCG-GCGacaUCAGGGCa -3'
miRNA:   3'- -UGGAUGCUGa-------------CGGCgUGCg--AGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 32921 0.74 0.205394
Target:  5'- gGCCUgcACGGCUGCUGUucgGC-CAGGGCg -3'
miRNA:   3'- -UGGA--UGCUGACGGCGug-CGaGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 31609 0.66 0.591281
Target:  5'- cCCUACcuGCUGCUuUACGCagcguggcagggccUCAAGGCa -3'
miRNA:   3'- uGGAUGc-UGACGGcGUGCG--------------AGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 31358 0.7 0.327914
Target:  5'- uACCUGgaagaaGACgGCCGgAagcUGCUCAAGGCg -3'
miRNA:   3'- -UGGAUg-----CUGaCGGCgU---GCGAGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.