Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26611 | 5' | -62.8 | NC_005357.1 | + | 14401 | 0.67 | 0.221793 |
Target: 5'- aGGCGUagcgaaGCUGgGCGUCgccaggcgCGCCUGCg -3' miRNA: 3'- gCCGCGgac---CGACgCGUAG--------GCGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 27842 | 0.67 | 0.221793 |
Target: 5'- uGGCGCC-GGCcGCGCcgCUGCUc-- -3' miRNA: 3'- gCCGCGGaCCGaCGCGuaGGCGGacg -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 21190 | 0.67 | 0.221793 |
Target: 5'- gCGGCcuGCugCUGGuCUGCGCGU-UGCUUGCg -3' miRNA: 3'- -GCCG--CG--GACC-GACGCGUAgGCGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 2341 | 0.67 | 0.227553 |
Target: 5'- -aGUGCgUGGC-GCGCGUgCGCC-GCa -3' miRNA: 3'- gcCGCGgACCGaCGCGUAgGCGGaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 20748 | 0.67 | 0.227553 |
Target: 5'- uGGCGCCguagagGcGCUGCGCcgcgcucgacucAUCgCGCggCUGCa -3' miRNA: 3'- gCCGCGGa-----C-CGACGCG------------UAG-GCG--GACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 42076 | 0.67 | 0.233439 |
Target: 5'- uCGG-GCCUGGCggacggccugcUGCGCGacgccaCCGCCaGCc -3' miRNA: 3'- -GCCgCGGACCG-----------ACGCGUa-----GGCGGaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 8601 | 0.67 | 0.233439 |
Target: 5'- nGGUGCuggauaagCUGGUUGCGCuucUCgGCCgcUGCg -3' miRNA: 3'- gCCGCG--------GACCGACGCGu--AGgCGG--ACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 20617 | 0.67 | 0.233439 |
Target: 5'- gCGGCGUCgcaGGUcG-GUGUCgGCCUGCg -3' miRNA: 3'- -GCCGCGGa--CCGaCgCGUAGgCGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 37927 | 0.67 | 0.239453 |
Target: 5'- -aGCGCCugUGGCgccgcGCGCAUCCGgCgGUu -3' miRNA: 3'- gcCGCGG--ACCGa----CGCGUAGGCgGaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 654 | 0.67 | 0.251869 |
Target: 5'- uCGGUGCCcaaGGCUGUaGCcaccaggCCGCCUacgGCg -3' miRNA: 3'- -GCCGCGGa--CCGACG-CGua-----GGCGGA---CG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 14603 | 0.66 | 0.257627 |
Target: 5'- cCGGCGCCaccgcgGGCaGCGCGcgcgaggacgugcUgCGgCUGCg -3' miRNA: 3'- -GCCGCGGa-----CCGaCGCGU-------------AgGCgGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 23947 | 0.66 | 0.258273 |
Target: 5'- aGGCGCCgcccGGCgagGUcgGCAUuuGCCgauucaUGCg -3' miRNA: 3'- gCCGCGGa---CCGa--CG--CGUAggCGG------ACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 41938 | 0.66 | 0.258273 |
Target: 5'- gCGGCGCaguauGCUGCcgagGCAUCCGaCC-GCg -3' miRNA: 3'- -GCCGCGgac--CGACG----CGUAGGC-GGaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 41069 | 0.66 | 0.26481 |
Target: 5'- uCGGuCGCC-GGaUGCGCAaggCCGCCgaccacgGCu -3' miRNA: 3'- -GCC-GCGGaCCgACGCGUa--GGCGGa------CG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 4515 | 0.66 | 0.27148 |
Target: 5'- gCGGCGCCcgugaacgUGGCgUGCuggGCGgucgugCCGCC-GCg -3' miRNA: 3'- -GCCGCGG--------ACCG-ACG---CGUa-----GGCGGaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 12140 | 0.66 | 0.27148 |
Target: 5'- -cGCGCCacgcGCUGCGCuUCCGCguagGCg -3' miRNA: 3'- gcCGCGGac--CGACGCGuAGGCGga--CG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 26836 | 0.66 | 0.27148 |
Target: 5'- uGGCcgaUGGCgcgGUGCAUCCGCa-GCg -3' miRNA: 3'- gCCGcggACCGa--CGCGUAGGCGgaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 16284 | 0.66 | 0.27148 |
Target: 5'- aCGGCGagccGCUGCGCcaaAUCUGCC-GCg -3' miRNA: 3'- -GCCGCggacCGACGCG---UAGGCGGaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 6294 | 0.66 | 0.277598 |
Target: 5'- gGGCGCCggGGCUuaucuccggugcGUGCAagacgcggcgcguUCCGCCccaGCc -3' miRNA: 3'- gCCGCGGa-CCGA------------CGCGU-------------AGGCGGa--CG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 3869 | 0.66 | 0.278285 |
Target: 5'- aGGCGCCgucGCUGUagg-CCGCgCUGCc -3' miRNA: 3'- gCCGCGGac-CGACGcguaGGCG-GACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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