miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 5' -62.8 NC_005357.1 + 17343 0.69 0.157652
Target:  5'- aCGGCGCCgGGC-GCGC-UgCGCUgggugGCg -3'
miRNA:   3'- -GCCGCGGaCCGaCGCGuAgGCGGa----CG- -5'
26611 5' -62.8 NC_005357.1 + 15360 0.69 0.157652
Target:  5'- aCGuGCGCUgcuucaccucGGUgaGCGCGUCCGCgUGCg -3'
miRNA:   3'- -GC-CGCGGa---------CCGa-CGCGUAGGCGgACG- -5'
26611 5' -62.8 NC_005357.1 + 24161 0.69 0.157652
Target:  5'- -aGCGCCUcgacGGCUGCGCGcuUCgGCgUGUc -3'
miRNA:   3'- gcCGCGGA----CCGACGCGU--AGgCGgACG- -5'
26611 5' -62.8 NC_005357.1 + 8385 0.69 0.166297
Target:  5'- cCGGCcucGCgCUGGCUGCGUagccaGUCgGCCaggGCc -3'
miRNA:   3'- -GCCG---CG-GACCGACGCG-----UAGgCGGa--CG- -5'
26611 5' -62.8 NC_005357.1 + 8157 0.69 0.170778
Target:  5'- uCGGCGCUgcguccCUGCGCGUgCGCCcggaUGCu -3'
miRNA:   3'- -GCCGCGGacc---GACGCGUAgGCGG----ACG- -5'
26611 5' -62.8 NC_005357.1 + 38576 0.69 0.171232
Target:  5'- aCGGCGCCUGGUacaacuucgccgagGUcaugacucaccacgGCAagCGCCUGCc -3'
miRNA:   3'- -GCCGCGGACCGa-------------CG--------------CGUagGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 18770 0.68 0.184872
Target:  5'- gGGuCGCCUGGUgcaguUGCuGCccgCCGCCgGCu -3'
miRNA:   3'- gCC-GCGGACCG-----ACG-CGua-GGCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 12847 0.68 0.184872
Target:  5'- cCGcGCGCCUGG--GCGCggCCGaCCUGa -3'
miRNA:   3'- -GC-CGCGGACCgaCGCGuaGGC-GGACg -5'
26611 5' -62.8 NC_005357.1 + 13622 0.68 0.188305
Target:  5'- aCGGCGCgCUGGCUGCucaagaucgGCAaCCagggcaagcgcgacGCCgUGCg -3'
miRNA:   3'- -GCCGCG-GACCGACG---------CGUaGG--------------CGG-ACG- -5'
26611 5' -62.8 NC_005357.1 + 38897 0.68 0.189793
Target:  5'- gCGGCGCCUGGaacgGCaCGUCgcuccggguucuCGCgCUGCg -3'
miRNA:   3'- -GCCGCGGACCga--CGcGUAG------------GCG-GACG- -5'
26611 5' -62.8 NC_005357.1 + 3700 0.68 0.19483
Target:  5'- aCGGCGacgcgCUGccccauGCgGCGCAUCCGCUcaUGCu -3'
miRNA:   3'- -GCCGCg----GAC------CGaCGCGUAGGCGG--ACG- -5'
26611 5' -62.8 NC_005357.1 + 27418 0.68 0.19483
Target:  5'- uCGcGCGCCUGGCgcaccGCGCccggCgGCCgcagGCc -3'
miRNA:   3'- -GC-CGCGGACCGa----CGCGua--GgCGGa---CG- -5'
26611 5' -62.8 NC_005357.1 + 14360 0.68 0.199983
Target:  5'- gCGGUGuCCUGGaaggcggGgGCAUCCGCgCcGCg -3'
miRNA:   3'- -GCCGC-GGACCga-----CgCGUAGGCG-GaCG- -5'
26611 5' -62.8 NC_005357.1 + 22995 0.68 0.199983
Target:  5'- uCGGCuuucGCCUGGUcggccUGCuGC-UgCGCCUGCu -3'
miRNA:   3'- -GCCG----CGGACCG-----ACG-CGuAgGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 27281 0.68 0.205254
Target:  5'- cCGuCGcCCUGG--GCGCAUCCGCCgccaGCa -3'
miRNA:   3'- -GCcGC-GGACCgaCGCGUAGGCGGa---CG- -5'
26611 5' -62.8 NC_005357.1 + 38902 0.68 0.210645
Target:  5'- gCGGUGUgcGGCUGUaugucuuaaGUGUCCGCaCUGCa -3'
miRNA:   3'- -GCCGCGgaCCGACG---------CGUAGGCG-GACG- -5'
26611 5' -62.8 NC_005357.1 + 1647 0.68 0.210645
Target:  5'- uCGGgGUa-GGuCUGCGCGUCCuGUUUGCg -3'
miRNA:   3'- -GCCgCGgaCC-GACGCGUAGG-CGGACG- -5'
26611 5' -62.8 NC_005357.1 + 27573 0.68 0.210645
Target:  5'- aGGCGCCcagcGuGCgGCGCuggCCGCCaacgGCa -3'
miRNA:   3'- gCCGCGGa---C-CGaCGCGua-GGCGGa---CG- -5'
26611 5' -62.8 NC_005357.1 + 2243 0.67 0.216157
Target:  5'- gCGGCGCgUGGCcGCGCAaugaaUCUuCUUGUc -3'
miRNA:   3'- -GCCGCGgACCGaCGCGU-----AGGcGGACG- -5'
26611 5' -62.8 NC_005357.1 + 18285 0.67 0.216157
Target:  5'- aGGCGCUgGGCcagGCGCGcagCCGgCUGg -3'
miRNA:   3'- gCCGCGGaCCGa--CGCGUa--GGCgGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.