Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26611 | 5' | -62.8 | NC_005357.1 | + | 654 | 0.67 | 0.251869 |
Target: 5'- uCGGUGCCcaaGGCUGUaGCcaccaggCCGCCUacgGCg -3' miRNA: 3'- -GCCGCGGa--CCGACG-CGua-----GGCGGA---CG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 37927 | 0.67 | 0.239453 |
Target: 5'- -aGCGCCugUGGCgccgcGCGCAUCCGgCgGUu -3' miRNA: 3'- gcCGCGG--ACCGa----CGCGUAGGCgGaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 8601 | 0.67 | 0.233439 |
Target: 5'- nGGUGCuggauaagCUGGUUGCGCuucUCgGCCgcUGCg -3' miRNA: 3'- gCCGCG--------GACCGACGCGu--AGgCGG--ACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 42076 | 0.67 | 0.233439 |
Target: 5'- uCGG-GCCUGGCggacggccugcUGCGCGacgccaCCGCCaGCc -3' miRNA: 3'- -GCCgCGGACCG-----------ACGCGUa-----GGCGGaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 20617 | 0.67 | 0.233439 |
Target: 5'- gCGGCGUCgcaGGUcG-GUGUCgGCCUGCg -3' miRNA: 3'- -GCCGCGGa--CCGaCgCGUAGgCGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 20748 | 0.67 | 0.227553 |
Target: 5'- uGGCGCCguagagGcGCUGCGCcgcgcucgacucAUCgCGCggCUGCa -3' miRNA: 3'- gCCGCGGa-----C-CGACGCG------------UAG-GCG--GACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 2341 | 0.67 | 0.227553 |
Target: 5'- -aGUGCgUGGC-GCGCGUgCGCC-GCa -3' miRNA: 3'- gcCGCGgACCGaCGCGUAgGCGGaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 27842 | 0.67 | 0.221793 |
Target: 5'- uGGCGCC-GGCcGCGCcgCUGCUc-- -3' miRNA: 3'- gCCGCGGaCCGaCGCGuaGGCGGacg -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 21190 | 0.67 | 0.221793 |
Target: 5'- gCGGCcuGCugCUGGuCUGCGCGU-UGCUUGCg -3' miRNA: 3'- -GCCG--CG--GACC-GACGCGUAgGCGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 14401 | 0.67 | 0.221793 |
Target: 5'- aGGCGUagcgaaGCUGgGCGUCgccaggcgCGCCUGCg -3' miRNA: 3'- gCCGCGgac---CGACgCGUAG--------GCGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 18285 | 0.67 | 0.216157 |
Target: 5'- aGGCGCUgGGCcagGCGCGcagCCGgCUGg -3' miRNA: 3'- gCCGCGGaCCGa--CGCGUa--GGCgGACg -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 2243 | 0.67 | 0.216157 |
Target: 5'- gCGGCGCgUGGCcGCGCAaugaaUCUuCUUGUc -3' miRNA: 3'- -GCCGCGgACCGaCGCGU-----AGGcGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 27573 | 0.68 | 0.210645 |
Target: 5'- aGGCGCCcagcGuGCgGCGCuggCCGCCaacgGCa -3' miRNA: 3'- gCCGCGGa---C-CGaCGCGua-GGCGGa---CG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 38902 | 0.68 | 0.210645 |
Target: 5'- gCGGUGUgcGGCUGUaugucuuaaGUGUCCGCaCUGCa -3' miRNA: 3'- -GCCGCGgaCCGACG---------CGUAGGCG-GACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 1647 | 0.68 | 0.210645 |
Target: 5'- uCGGgGUa-GGuCUGCGCGUCCuGUUUGCg -3' miRNA: 3'- -GCCgCGgaCC-GACGCGUAGG-CGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 27281 | 0.68 | 0.205254 |
Target: 5'- cCGuCGcCCUGG--GCGCAUCCGCCgccaGCa -3' miRNA: 3'- -GCcGC-GGACCgaCGCGUAGGCGGa---CG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 14360 | 0.68 | 0.199983 |
Target: 5'- gCGGUGuCCUGGaaggcggGgGCAUCCGCgCcGCg -3' miRNA: 3'- -GCCGC-GGACCga-----CgCGUAGGCG-GaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 22995 | 0.68 | 0.199983 |
Target: 5'- uCGGCuuucGCCUGGUcggccUGCuGC-UgCGCCUGCu -3' miRNA: 3'- -GCCG----CGGACCG-----ACG-CGuAgGCGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 3700 | 0.68 | 0.19483 |
Target: 5'- aCGGCGacgcgCUGccccauGCgGCGCAUCCGCUcaUGCu -3' miRNA: 3'- -GCCGCg----GAC------CGaCGCGUAGGCGG--ACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 27418 | 0.68 | 0.19483 |
Target: 5'- uCGcGCGCCUGGCgcaccGCGCccggCgGCCgcagGCc -3' miRNA: 3'- -GC-CGCGGACCGa----CGCGua--GgCGGa---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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