miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 5' -62.8 NC_005357.1 + 13209 0.73 0.08161
Target:  5'- uCGGCGgaCUGGaCgccaugcGCGCGUCCGaCCUGCc -3'
miRNA:   3'- -GCCGCg-GACC-Ga------CGCGUAGGC-GGACG- -5'
26611 5' -62.8 NC_005357.1 + 13622 0.68 0.188305
Target:  5'- aCGGCGCgCUGGCUGCucaagaucgGCAaCCagggcaagcgcgacGCCgUGCg -3'
miRNA:   3'- -GCCGCG-GACCGACG---------CGUaGG--------------CGG-ACG- -5'
26611 5' -62.8 NC_005357.1 + 14323 0.66 0.285224
Target:  5'- gCGcGCGCCuUGGCUGaacugCCggGCCUGCu -3'
miRNA:   3'- -GC-CGCGG-ACCGACgcguaGG--CGGACG- -5'
26611 5' -62.8 NC_005357.1 + 14360 0.68 0.199983
Target:  5'- gCGGUGuCCUGGaaggcggGgGCAUCCGCgCcGCg -3'
miRNA:   3'- -GCCGC-GGACCga-----CgCGUAGGCG-GaCG- -5'
26611 5' -62.8 NC_005357.1 + 14401 0.67 0.221793
Target:  5'- aGGCGUagcgaaGCUGgGCGUCgccaggcgCGCCUGCg -3'
miRNA:   3'- gCCGCGgac---CGACgCGUAG--------GCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 14603 0.66 0.257627
Target:  5'- cCGGCGCCaccgcgGGCaGCGCGcgcgaggacgugcUgCGgCUGCg -3'
miRNA:   3'- -GCCGCGGa-----CCGaCGCGU-------------AgGCgGACG- -5'
26611 5' -62.8 NC_005357.1 + 14971 0.71 0.127005
Target:  5'- gCGGCGCgCUGGCauaccaGCGCcaggGCCUGCg -3'
miRNA:   3'- -GCCGCG-GACCGa-----CGCGuaggCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 15360 0.69 0.157652
Target:  5'- aCGuGCGCUgcuucaccucGGUgaGCGCGUCCGCgUGCg -3'
miRNA:   3'- -GC-CGCGGa---------CCGa-CGCGUAGGCGgACG- -5'
26611 5' -62.8 NC_005357.1 + 15974 0.71 0.127005
Target:  5'- aCGGaUGCCgaGGUcgaGCGCAUCCGCgaaCUGCa -3'
miRNA:   3'- -GCC-GCGGa-CCGa--CGCGUAGGCG---GACG- -5'
26611 5' -62.8 NC_005357.1 + 16284 0.66 0.27148
Target:  5'- aCGGCGagccGCUGCGCcaaAUCUGCC-GCg -3'
miRNA:   3'- -GCCGCggacCGACGCG---UAGGCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 17294 0.76 0.050505
Target:  5'- cCGGCGCCgcgGGC-GCGCAUCCauuCCgGCa -3'
miRNA:   3'- -GCCGCGGa--CCGaCGCGUAGGc--GGaCG- -5'
26611 5' -62.8 NC_005357.1 + 17343 0.69 0.157652
Target:  5'- aCGGCGCCgGGC-GCGC-UgCGCUgggugGCg -3'
miRNA:   3'- -GCCGCGGaCCGaCGCGuAgGCGGa----CG- -5'
26611 5' -62.8 NC_005357.1 + 18064 0.66 0.285224
Target:  5'- cCGGCGCg-GGgUGCGUgcugggCCGCCgaagccgGCg -3'
miRNA:   3'- -GCCGCGgaCCgACGCGua----GGCGGa------CG- -5'
26611 5' -62.8 NC_005357.1 + 18285 0.67 0.216157
Target:  5'- aGGCGCUgGGCcagGCGCGcagCCGgCUGg -3'
miRNA:   3'- gCCGCGGaCCGa--CGCGUa--GGCgGACg -5'
26611 5' -62.8 NC_005357.1 + 18694 0.66 0.285224
Target:  5'- uGGCGCU--GCUGCGCG-CCaCCgagGCa -3'
miRNA:   3'- gCCGCGGacCGACGCGUaGGcGGa--CG- -5'
26611 5' -62.8 NC_005357.1 + 18770 0.68 0.184872
Target:  5'- gGGuCGCCUGGUgcaguUGCuGCccgCCGCCgGCu -3'
miRNA:   3'- gCC-GCGGACCG-----ACG-CGua-GGCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 20617 0.67 0.233439
Target:  5'- gCGGCGUCgcaGGUcG-GUGUCgGCCUGCg -3'
miRNA:   3'- -GCCGCGGa--CCGaCgCGUAGgCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 20748 0.67 0.227553
Target:  5'- uGGCGCCguagagGcGCUGCGCcgcgcucgacucAUCgCGCggCUGCa -3'
miRNA:   3'- gCCGCGGa-----C-CGACGCG------------UAG-GCG--GACG- -5'
26611 5' -62.8 NC_005357.1 + 21190 0.67 0.221793
Target:  5'- gCGGCcuGCugCUGGuCUGCGCGU-UGCUUGCg -3'
miRNA:   3'- -GCCG--CG--GACC-GACGCGUAgGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 22011 0.66 0.287333
Target:  5'- uCGGCGCCUGGCucgaaauagaccgacUuccacgccauguuGCGguCGUCgCGCUUGCu -3'
miRNA:   3'- -GCCGCGGACCG---------------A-------------CGC--GUAG-GCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.