miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 5' -62.8 NC_005357.1 + 654 0.67 0.251869
Target:  5'- uCGGUGCCcaaGGCUGUaGCcaccaggCCGCCUacgGCg -3'
miRNA:   3'- -GCCGCGGa--CCGACG-CGua-----GGCGGA---CG- -5'
26611 5' -62.8 NC_005357.1 + 1647 0.68 0.210645
Target:  5'- uCGGgGUa-GGuCUGCGCGUCCuGUUUGCg -3'
miRNA:   3'- -GCCgCGgaCC-GACGCGUAGG-CGGACG- -5'
26611 5' -62.8 NC_005357.1 + 2243 0.67 0.216157
Target:  5'- gCGGCGCgUGGCcGCGCAaugaaUCUuCUUGUc -3'
miRNA:   3'- -GCCGCGgACCGaCGCGU-----AGGcGGACG- -5'
26611 5' -62.8 NC_005357.1 + 2341 0.67 0.227553
Target:  5'- -aGUGCgUGGC-GCGCGUgCGCC-GCa -3'
miRNA:   3'- gcCGCGgACCGaCGCGUAgGCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 3184 0.66 0.285224
Target:  5'- cCGGCGUCc-GCUGCGUAca-GCUUGCu -3'
miRNA:   3'- -GCCGCGGacCGACGCGUaggCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 3700 0.68 0.19483
Target:  5'- aCGGCGacgcgCUGccccauGCgGCGCAUCCGCUcaUGCu -3'
miRNA:   3'- -GCCGCg----GAC------CGaCGCGUAGGCGG--ACG- -5'
26611 5' -62.8 NC_005357.1 + 3869 0.66 0.278285
Target:  5'- aGGCGCCgucGCUGUagg-CCGCgCUGCc -3'
miRNA:   3'- gCCGCGGac-CGACGcguaGGCG-GACG- -5'
26611 5' -62.8 NC_005357.1 + 4515 0.66 0.27148
Target:  5'- gCGGCGCCcgugaacgUGGCgUGCuggGCGgucgugCCGCC-GCg -3'
miRNA:   3'- -GCCGCGG--------ACCG-ACG---CGUa-----GGCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 5337 0.78 0.035746
Target:  5'- uGGCGCagcaUGGCaucgcgcUGCGUggCCGCCUGCa -3'
miRNA:   3'- gCCGCGg---ACCG-------ACGCGuaGGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 6294 0.66 0.277598
Target:  5'- gGGCGCCggGGCUuaucuccggugcGUGCAagacgcggcgcguUCCGCCccaGCc -3'
miRNA:   3'- gCCGCGGa-CCGA------------CGCGU-------------AGGCGGa--CG- -5'
26611 5' -62.8 NC_005357.1 + 8157 0.69 0.170778
Target:  5'- uCGGCGCUgcguccCUGCGCGUgCGCCcggaUGCu -3'
miRNA:   3'- -GCCGCGGacc---GACGCGUAgGCGG----ACG- -5'
26611 5' -62.8 NC_005357.1 + 8385 0.69 0.166297
Target:  5'- cCGGCcucGCgCUGGCUGCGUagccaGUCgGCCaggGCc -3'
miRNA:   3'- -GCCG---CG-GACCGACGCG-----UAGgCGGa--CG- -5'
26611 5' -62.8 NC_005357.1 + 8575 0.71 0.127005
Target:  5'- gGGCGUCguaGGCcGCGCGUgCgGCCUGg -3'
miRNA:   3'- gCCGCGGa--CCGaCGCGUA-GgCGGACg -5'
26611 5' -62.8 NC_005357.1 + 8601 0.67 0.233439
Target:  5'- nGGUGCuggauaagCUGGUUGCGCuucUCgGCCgcUGCg -3'
miRNA:   3'- gCCGCG--------GACCGACGCGu--AGgCGG--ACG- -5'
26611 5' -62.8 NC_005357.1 + 9311 0.73 0.083923
Target:  5'- uCGGCGaCCUGGCgGCGCAcgUCgGCgCgGCg -3'
miRNA:   3'- -GCCGC-GGACCGaCGCGU--AGgCG-GaCG- -5'
26611 5' -62.8 NC_005357.1 + 9892 0.71 0.113524
Target:  5'- cCGGCGgcagcauCCUGGCcG-GCAUCaccaGCCUGCa -3'
miRNA:   3'- -GCCGC-------GGACCGaCgCGUAGg---CGGACG- -5'
26611 5' -62.8 NC_005357.1 + 9943 0.66 0.2923
Target:  5'- uCGGC-CUUGGauucggGCGCAUCgGCC-GCc -3'
miRNA:   3'- -GCCGcGGACCga----CGCGUAGgCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 12140 0.66 0.27148
Target:  5'- -cGCGCCacgcGCUGCGCuUCCGCguagGCg -3'
miRNA:   3'- gcCGCGGac--CGACGCGuAGGCGga--CG- -5'
26611 5' -62.8 NC_005357.1 + 12847 0.68 0.184872
Target:  5'- cCGcGCGCCUGG--GCGCggCCGaCCUGa -3'
miRNA:   3'- -GC-CGCGGACCgaCGCGuaGGC-GGACg -5'
26611 5' -62.8 NC_005357.1 + 13188 0.76 0.047709
Target:  5'- gGGCGCCcuUGGCcgGCGUuguaCGCCUGCa -3'
miRNA:   3'- gCCGCGG--ACCGa-CGCGuag-GCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.