miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 5' -62.8 NC_005357.1 + 42253 0.82 0.016943
Target:  5'- aCGGUGCCcaGCgacaccgggGCGCAUCCGCCUGCg -3'
miRNA:   3'- -GCCGCGGacCGa--------CGCGUAGGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 42076 0.67 0.233439
Target:  5'- uCGG-GCCUGGCggacggccugcUGCGCGacgccaCCGCCaGCc -3'
miRNA:   3'- -GCCgCGGACCG-----------ACGCGUa-----GGCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 41938 0.66 0.258273
Target:  5'- gCGGCGCaguauGCUGCcgagGCAUCCGaCC-GCg -3'
miRNA:   3'- -GCCGCGgac--CGACG----CGUAGGC-GGaCG- -5'
26611 5' -62.8 NC_005357.1 + 41743 0.66 0.278285
Target:  5'- gGGCgGCCcGGCcgGCGCcgCCGUagGCg -3'
miRNA:   3'- gCCG-CGGaCCGa-CGCGuaGGCGgaCG- -5'
26611 5' -62.8 NC_005357.1 + 41069 0.66 0.26481
Target:  5'- uCGGuCGCC-GGaUGCGCAaggCCGCCgaccacgGCu -3'
miRNA:   3'- -GCC-GCGGaCCgACGCGUa--GGCGGa------CG- -5'
26611 5' -62.8 NC_005357.1 + 39597 0.75 0.059879
Target:  5'- uGGCGCC--GCUGCGCGUggCCGCgaGCa -3'
miRNA:   3'- gCCGCGGacCGACGCGUA--GGCGgaCG- -5'
26611 5' -62.8 NC_005357.1 + 38902 0.68 0.210645
Target:  5'- gCGGUGUgcGGCUGUaugucuuaaGUGUCCGCaCUGCa -3'
miRNA:   3'- -GCCGCGgaCCGACG---------CGUAGGCG-GACG- -5'
26611 5' -62.8 NC_005357.1 + 38897 0.68 0.189793
Target:  5'- gCGGCGCCUGGaacgGCaCGUCgcuccggguucuCGCgCUGCg -3'
miRNA:   3'- -GCCGCGGACCga--CGcGUAG------------GCG-GACG- -5'
26611 5' -62.8 NC_005357.1 + 38576 0.69 0.171232
Target:  5'- aCGGCGCCUGGUacaacuucgccgagGUcaugacucaccacgGCAagCGCCUGCc -3'
miRNA:   3'- -GCCGCGGACCGa-------------CG--------------CGUagGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 38053 1.1 0.0001
Target:  5'- aCGGCGCCUGGCUGCGCAUCCGCCUGCc -3'
miRNA:   3'- -GCCGCGGACCGACGCGUAGGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 37927 0.67 0.239453
Target:  5'- -aGCGCCugUGGCgccgcGCGCAUCCGgCgGUu -3'
miRNA:   3'- gcCGCGG--ACCGa----CGCGUAGGCgGaCG- -5'
26611 5' -62.8 NC_005357.1 + 37319 0.71 0.130511
Target:  5'- aCGGCGCCaGccgcaccggacGCUGgGCcggCCGCCUGUu -3'
miRNA:   3'- -GCCGCGGaC-----------CGACgCGua-GGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 33745 0.71 0.120253
Target:  5'- gCGGCGCacaccugGGCgGCGCAgcagCCG-CUGCa -3'
miRNA:   3'- -GCCGCGga-----CCGaCGCGUa---GGCgGACG- -5'
26611 5' -62.8 NC_005357.1 + 33396 0.7 0.137792
Target:  5'- uCGGCuuuacGUCUGGUgacgaacugGUGCG-CCGCCUGCu -3'
miRNA:   3'- -GCCG-----CGGACCGa--------CGCGUaGGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 32793 0.71 0.130511
Target:  5'- uCGGCaCCUcgcugGuGCUGCGCGUCUGCCgGUc -3'
miRNA:   3'- -GCCGcGGA-----C-CGACGCGUAGGCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 31175 0.66 0.285224
Target:  5'- cCGGUGaagcaCgGGCcGCGCAcguUCUGCCUGa -3'
miRNA:   3'- -GCCGCg----GaCCGaCGCGU---AGGCGGACg -5'
26611 5' -62.8 NC_005357.1 + 30471 0.66 0.285224
Target:  5'- gGGCGCC-GGUcauCGCGUCa-CCUGCu -3'
miRNA:   3'- gCCGCGGaCCGac-GCGUAGgcGGACG- -5'
26611 5' -62.8 NC_005357.1 + 28593 0.7 0.141571
Target:  5'- aGGCGCaauuGCUGgGCAaaUCCGCCgagugGCa -3'
miRNA:   3'- gCCGCGgac-CGACgCGU--AGGCGGa----CG- -5'
26611 5' -62.8 NC_005357.1 + 27842 0.67 0.221793
Target:  5'- uGGCGCC-GGCcGCGCcgCUGCUc-- -3'
miRNA:   3'- gCCGCGGaCCGaCGCGuaGGCGGacg -5'
26611 5' -62.8 NC_005357.1 + 27683 0.72 0.096458
Target:  5'- uGcGCGCCaauGCUGCGCGUaCUGCCUGg -3'
miRNA:   3'- gC-CGCGGac-CGACGCGUA-GGCGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.