Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26611 | 5' | -62.8 | NC_005357.1 | + | 2243 | 0.67 | 0.216157 |
Target: 5'- gCGGCGCgUGGCcGCGCAaugaaUCUuCUUGUc -3' miRNA: 3'- -GCCGCGgACCGaCGCGU-----AGGcGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 15360 | 0.69 | 0.157652 |
Target: 5'- aCGuGCGCUgcuucaccucGGUgaGCGCGUCCGCgUGCg -3' miRNA: 3'- -GC-CGCGGa---------CCGa-CGCGUAGGCGgACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 8385 | 0.69 | 0.166297 |
Target: 5'- cCGGCcucGCgCUGGCUGCGUagccaGUCgGCCaggGCc -3' miRNA: 3'- -GCCG---CG-GACCGACGCG-----UAGgCGGa--CG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 8157 | 0.69 | 0.170778 |
Target: 5'- uCGGCGCUgcguccCUGCGCGUgCGCCcggaUGCu -3' miRNA: 3'- -GCCGCGGacc---GACGCGUAgGCGG----ACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 27418 | 0.68 | 0.19483 |
Target: 5'- uCGcGCGCCUGGCgcaccGCGCccggCgGCCgcagGCc -3' miRNA: 3'- -GC-CGCGGACCGa----CGCGua--GgCGGa---CG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 14360 | 0.68 | 0.199983 |
Target: 5'- gCGGUGuCCUGGaaggcggGgGCAUCCGCgCcGCg -3' miRNA: 3'- -GCCGC-GGACCga-----CgCGUAGGCG-GaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 22995 | 0.68 | 0.199983 |
Target: 5'- uCGGCuuucGCCUGGUcggccUGCuGC-UgCGCCUGCu -3' miRNA: 3'- -GCCG----CGGACCG-----ACG-CGuAgGCGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 1647 | 0.68 | 0.210645 |
Target: 5'- uCGGgGUa-GGuCUGCGCGUCCuGUUUGCg -3' miRNA: 3'- -GCCgCGgaCC-GACGCGUAGG-CGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 38902 | 0.68 | 0.210645 |
Target: 5'- gCGGUGUgcGGCUGUaugucuuaaGUGUCCGCaCUGCa -3' miRNA: 3'- -GCCGCGgaCCGACG---------CGUAGGCG-GACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 24161 | 0.69 | 0.157652 |
Target: 5'- -aGCGCCUcgacGGCUGCGCGcuUCgGCgUGUc -3' miRNA: 3'- gcCGCGGA----CCGACGCGU--AGgCGgACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 22235 | 0.7 | 0.149013 |
Target: 5'- gCGGC-CCUGGUUgucggccgcgaugGCGUAUUCGCCgGCc -3' miRNA: 3'- -GCCGcGGACCGA-------------CGCGUAGGCGGaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 23992 | 0.7 | 0.141571 |
Target: 5'- uCGGCGCacagaCUGGCgaagguggGCGCGUCgGCCa-- -3' miRNA: 3'- -GCCGCG-----GACCGa-------CGCGUAGgCGGacg -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 13188 | 0.76 | 0.047709 |
Target: 5'- gGGCGCCcuUGGCcgGCGUuguaCGCCUGCa -3' miRNA: 3'- gCCGCGG--ACCGa-CGCGuag-GCGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 17294 | 0.76 | 0.050505 |
Target: 5'- cCGGCGCCgcgGGC-GCGCAUCCauuCCgGCa -3' miRNA: 3'- -GCCGCGGa--CCGaCGCGUAGGc--GGaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 39597 | 0.75 | 0.059879 |
Target: 5'- uGGCGCC--GCUGCGCGUggCCGCgaGCa -3' miRNA: 3'- gCCGCGGacCGACGCGUA--GGCGgaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 9311 | 0.73 | 0.083923 |
Target: 5'- uCGGCGaCCUGGCgGCGCAcgUCgGCgCgGCg -3' miRNA: 3'- -GCCGC-GGACCGaCGCGU--AGgCG-GaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 33745 | 0.71 | 0.120253 |
Target: 5'- gCGGCGCacaccugGGCgGCGCAgcagCCG-CUGCa -3' miRNA: 3'- -GCCGCGga-----CCGaCGCGUa---GGCgGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 8575 | 0.71 | 0.127005 |
Target: 5'- gGGCGUCguaGGCcGCGCGUgCgGCCUGg -3' miRNA: 3'- gCCGCGGa--CCGaCGCGUA-GgCGGACg -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 37319 | 0.71 | 0.130511 |
Target: 5'- aCGGCGCCaGccgcaccggacGCUGgGCcggCCGCCUGUu -3' miRNA: 3'- -GCCGCGGaC-----------CGACgCGua-GGCGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 32793 | 0.71 | 0.130511 |
Target: 5'- uCGGCaCCUcgcugGuGCUGCGCGUCUGCCgGUc -3' miRNA: 3'- -GCCGcGGA-----C-CGACGCGUAGGCGGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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