miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 5' -62.8 NC_005357.1 + 42253 0.82 0.016943
Target:  5'- aCGGUGCCcaGCgacaccgggGCGCAUCCGCCUGCg -3'
miRNA:   3'- -GCCGCGGacCGa--------CGCGUAGGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 27573 0.68 0.210645
Target:  5'- aGGCGCCcagcGuGCgGCGCuggCCGCCaacgGCa -3'
miRNA:   3'- gCCGCGGa---C-CGaCGCGua-GGCGGa---CG- -5'
26611 5' -62.8 NC_005357.1 + 42076 0.67 0.233439
Target:  5'- uCGG-GCCUGGCggacggccugcUGCGCGacgccaCCGCCaGCc -3'
miRNA:   3'- -GCCgCGGACCG-----------ACGCGUa-----GGCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 9943 0.66 0.2923
Target:  5'- uCGGC-CUUGGauucggGCGCAUCgGCC-GCc -3'
miRNA:   3'- -GCCGcGGACCga----CGCGUAGgCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 9892 0.71 0.113524
Target:  5'- cCGGCGgcagcauCCUGGCcG-GCAUCaccaGCCUGCa -3'
miRNA:   3'- -GCCGC-------GGACCGaCgCGUAGg---CGGACG- -5'
26611 5' -62.8 NC_005357.1 + 14971 0.71 0.127005
Target:  5'- gCGGCGCgCUGGCauaccaGCGCcaggGCCUGCg -3'
miRNA:   3'- -GCCGCG-GACCGa-----CGCGuaggCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 33396 0.7 0.137792
Target:  5'- uCGGCuuuacGUCUGGUgacgaacugGUGCG-CCGCCUGCu -3'
miRNA:   3'- -GCCG-----CGGACCGa--------CGCGUaGGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 28593 0.7 0.141571
Target:  5'- aGGCGCaauuGCUGgGCAaaUCCGCCgagugGCa -3'
miRNA:   3'- gCCGCGgac-CGACgCGU--AGGCGGa----CG- -5'
26611 5' -62.8 NC_005357.1 + 12847 0.68 0.184872
Target:  5'- cCGcGCGCCUGG--GCGCggCCGaCCUGa -3'
miRNA:   3'- -GC-CGCGGACCgaCGCGuaGGC-GGACg -5'
26611 5' -62.8 NC_005357.1 + 27281 0.68 0.205254
Target:  5'- cCGuCGcCCUGG--GCGCAUCCGCCgccaGCa -3'
miRNA:   3'- -GCcGC-GGACCgaCGCGUAGGCGGa---CG- -5'
26611 5' -62.8 NC_005357.1 + 13622 0.68 0.188305
Target:  5'- aCGGCGCgCUGGCUGCucaagaucgGCAaCCagggcaagcgcgacGCCgUGCg -3'
miRNA:   3'- -GCCGCG-GACCGACG---------CGUaGG--------------CGG-ACG- -5'
26611 5' -62.8 NC_005357.1 + 38576 0.69 0.171232
Target:  5'- aCGGCGCCUGGUacaacuucgccgagGUcaugacucaccacgGCAagCGCCUGCc -3'
miRNA:   3'- -GCCGCGGACCGa-------------CG--------------CGUagGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 5337 0.78 0.035746
Target:  5'- uGGCGCagcaUGGCaucgcgcUGCGUggCCGCCUGCa -3'
miRNA:   3'- gCCGCGg---ACCG-------ACGCGuaGGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 38897 0.68 0.189793
Target:  5'- gCGGCGCCUGGaacgGCaCGUCgcuccggguucuCGCgCUGCg -3'
miRNA:   3'- -GCCGCGGACCga--CGcGUAG------------GCG-GACG- -5'
26611 5' -62.8 NC_005357.1 + 13209 0.73 0.08161
Target:  5'- uCGGCGgaCUGGaCgccaugcGCGCGUCCGaCCUGCc -3'
miRNA:   3'- -GCCGCg-GACC-Ga------CGCGUAGGC-GGACG- -5'
26611 5' -62.8 NC_005357.1 + 17343 0.69 0.157652
Target:  5'- aCGGCGCCgGGC-GCGC-UgCGCUgggugGCg -3'
miRNA:   3'- -GCCGCGGaCCGaCGCGuAgGCGGa----CG- -5'
26611 5' -62.8 NC_005357.1 + 3700 0.68 0.19483
Target:  5'- aCGGCGacgcgCUGccccauGCgGCGCAUCCGCUcaUGCu -3'
miRNA:   3'- -GCCGCg----GAC------CGaCGCGUAGGCGG--ACG- -5'
26611 5' -62.8 NC_005357.1 + 18285 0.67 0.216157
Target:  5'- aGGCGCUgGGCcagGCGCGcagCCGgCUGg -3'
miRNA:   3'- gCCGCGGaCCGa--CGCGUa--GGCgGACg -5'
26611 5' -62.8 NC_005357.1 + 27683 0.72 0.096458
Target:  5'- uGcGCGCCaauGCUGCGCGUaCUGCCUGg -3'
miRNA:   3'- gC-CGCGGac-CGACGCGUA-GGCGGACg -5'
26611 5' -62.8 NC_005357.1 + 15974 0.71 0.127005
Target:  5'- aCGGaUGCCgaGGUcgaGCGCAUCCGCgaaCUGCa -3'
miRNA:   3'- -GCC-GCGGa-CCGa--CGCGUAGGCG---GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.