Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26611 | 5' | -62.8 | NC_005357.1 | + | 22235 | 0.7 | 0.149013 |
Target: 5'- gCGGC-CCUGGUUgucggccgcgaugGCGUAUUCGCCgGCc -3' miRNA: 3'- -GCCGcGGACCGA-------------CGCGUAGGCGGaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 22995 | 0.68 | 0.199983 |
Target: 5'- uCGGCuuucGCCUGGUcggccUGCuGC-UgCGCCUGCu -3' miRNA: 3'- -GCCG----CGGACCG-----ACG-CGuAgGCGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 23947 | 0.66 | 0.258273 |
Target: 5'- aGGCGCCgcccGGCgagGUcgGCAUuuGCCgauucaUGCg -3' miRNA: 3'- gCCGCGGa---CCGa--CG--CGUAggCGG------ACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 23992 | 0.7 | 0.141571 |
Target: 5'- uCGGCGCacagaCUGGCgaagguggGCGCGUCgGCCa-- -3' miRNA: 3'- -GCCGCG-----GACCGa-------CGCGUAGgCGGacg -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 24161 | 0.69 | 0.157652 |
Target: 5'- -aGCGCCUcgacGGCUGCGCGcuUCgGCgUGUc -3' miRNA: 3'- gcCGCGGA----CCGACGCGU--AGgCGgACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 24363 | 0.66 | 0.285224 |
Target: 5'- uCGG-GUCgagGGCUucGCGCAUUCGCCaccacaacucgcUGCg -3' miRNA: 3'- -GCCgCGGa--CCGA--CGCGUAGGCGG------------ACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 26836 | 0.66 | 0.27148 |
Target: 5'- uGGCcgaUGGCgcgGUGCAUCCGCa-GCg -3' miRNA: 3'- gCCGcggACCGa--CGCGUAGGCGgaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 27281 | 0.68 | 0.205254 |
Target: 5'- cCGuCGcCCUGG--GCGCAUCCGCCgccaGCa -3' miRNA: 3'- -GCcGC-GGACCgaCGCGUAGGCGGa---CG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 27418 | 0.68 | 0.19483 |
Target: 5'- uCGcGCGCCUGGCgcaccGCGCccggCgGCCgcagGCc -3' miRNA: 3'- -GC-CGCGGACCGa----CGCGua--GgCGGa---CG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 27573 | 0.68 | 0.210645 |
Target: 5'- aGGCGCCcagcGuGCgGCGCuggCCGCCaacgGCa -3' miRNA: 3'- gCCGCGGa---C-CGaCGCGua-GGCGGa---CG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 27683 | 0.72 | 0.096458 |
Target: 5'- uGcGCGCCaauGCUGCGCGUaCUGCCUGg -3' miRNA: 3'- gC-CGCGGac-CGACGCGUA-GGCGGACg -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 27842 | 0.67 | 0.221793 |
Target: 5'- uGGCGCC-GGCcGCGCcgCUGCUc-- -3' miRNA: 3'- gCCGCGGaCCGaCGCGuaGGCGGacg -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 28593 | 0.7 | 0.141571 |
Target: 5'- aGGCGCaauuGCUGgGCAaaUCCGCCgagugGCa -3' miRNA: 3'- gCCGCGgac-CGACgCGU--AGGCGGa----CG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 30471 | 0.66 | 0.285224 |
Target: 5'- gGGCGCC-GGUcauCGCGUCa-CCUGCu -3' miRNA: 3'- gCCGCGGaCCGac-GCGUAGgcGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 31175 | 0.66 | 0.285224 |
Target: 5'- cCGGUGaagcaCgGGCcGCGCAcguUCUGCCUGa -3' miRNA: 3'- -GCCGCg----GaCCGaCGCGU---AGGCGGACg -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 32793 | 0.71 | 0.130511 |
Target: 5'- uCGGCaCCUcgcugGuGCUGCGCGUCUGCCgGUc -3' miRNA: 3'- -GCCGcGGA-----C-CGACGCGUAGGCGGaCG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 33396 | 0.7 | 0.137792 |
Target: 5'- uCGGCuuuacGUCUGGUgacgaacugGUGCG-CCGCCUGCu -3' miRNA: 3'- -GCCG-----CGGACCGa--------CGCGUaGGCGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 33745 | 0.71 | 0.120253 |
Target: 5'- gCGGCGCacaccugGGCgGCGCAgcagCCG-CUGCa -3' miRNA: 3'- -GCCGCGga-----CCGaCGCGUa---GGCgGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 37319 | 0.71 | 0.130511 |
Target: 5'- aCGGCGCCaGccgcaccggacGCUGgGCcggCCGCCUGUu -3' miRNA: 3'- -GCCGCGGaC-----------CGACgCGua-GGCGGACG- -5' |
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26611 | 5' | -62.8 | NC_005357.1 | + | 37927 | 0.67 | 0.239453 |
Target: 5'- -aGCGCCugUGGCgccgcGCGCAUCCGgCgGUu -3' miRNA: 3'- gcCGCGG--ACCGa----CGCGUAGGCgGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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