Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26614 | 3' | -55.5 | NC_005357.1 | + | 38942 | 1.08 | 0.000582 |
Target: 5'- aAGUGGCACCACACCAAGAAGCAGCCAu -3' miRNA: 3'- -UCACCGUGGUGUGGUUCUUCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 32551 | 0.78 | 0.104131 |
Target: 5'- ---cGCGCCugGCCGAGAAGCAGCg- -3' miRNA: 3'- ucacCGUGGugUGGUUCUUCGUCGgu -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 24978 | 0.75 | 0.16998 |
Target: 5'- cGUGGCACCugGCCucGAugcuGGCggGGCCAc -3' miRNA: 3'- uCACCGUGGugUGGuuCU----UCG--UCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 18166 | 0.74 | 0.190156 |
Target: 5'- --cGGCGCCACGCuCAAGGuGGCaAGCCGc -3' miRNA: 3'- ucaCCGUGGUGUG-GUUCU-UCG-UCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 13753 | 0.73 | 0.224349 |
Target: 5'- cGUGGCgcGCCGCGCUGGcGAGGCcGCCGg -3' miRNA: 3'- uCACCG--UGGUGUGGUU-CUUCGuCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 17440 | 0.72 | 0.243328 |
Target: 5'- cAGUGGCcccGCCAgCAUCGAGGccAGguGCCAc -3' miRNA: 3'- -UCACCG---UGGU-GUGGUUCU--UCguCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 14979 | 0.72 | 0.263624 |
Target: 5'- -cUGGCAUaccaGCGCCAGGGccuGCGGCCGc -3' miRNA: 3'- ucACCGUGg---UGUGGUUCUu--CGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 12558 | 0.72 | 0.277176 |
Target: 5'- gGGUGGUGCUAgACCcguucgcAGGAAGCGGCaCAa -3' miRNA: 3'- -UCACCGUGGUgUGG-------UUCUUCGUCG-GU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 14774 | 0.71 | 0.292795 |
Target: 5'- aGGUGGCGCC-CACCuGGGuAGCuuucauGCCGa -3' miRNA: 3'- -UCACCGUGGuGUGGuUCU-UCGu-----CGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 18285 | 0.71 | 0.300471 |
Target: 5'- --aGGCGCUGgGCCAGGcgcGCAGCCGg -3' miRNA: 3'- ucaCCGUGGUgUGGUUCuu-CGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 27485 | 0.71 | 0.300471 |
Target: 5'- ---cGCACCACGCgAGGAugccGGCGGCCu -3' miRNA: 3'- ucacCGUGGUGUGgUUCU----UCGUCGGu -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 33226 | 0.71 | 0.300471 |
Target: 5'- cGU-GCGCCGCGCCGccGAGCAGgCCAa -3' miRNA: 3'- uCAcCGUGGUGUGGUucUUCGUC-GGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 2846 | 0.7 | 0.324427 |
Target: 5'- cAGcGGCGCCAgCACCAGcGAGgGGCCu -3' miRNA: 3'- -UCaCCGUGGU-GUGGUUcUUCgUCGGu -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 31620 | 0.7 | 0.324427 |
Target: 5'- --aGGauucaGCCGCGCCGAGgcGCAGCa- -3' miRNA: 3'- ucaCCg----UGGUGUGGUUCuuCGUCGgu -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 14917 | 0.7 | 0.341172 |
Target: 5'- -----gACCGCGCCGAGAagcuGGCGGCCGa -3' miRNA: 3'- ucaccgUGGUGUGGUUCU----UCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 13573 | 0.7 | 0.349776 |
Target: 5'- cGUGGCGCgGCGCUggGAcAGCuucggcaaguccGGCCGc -3' miRNA: 3'- uCACCGUGgUGUGGuuCU-UCG------------UCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 4429 | 0.7 | 0.349776 |
Target: 5'- ---cGUGCCGCGCCAgggGGAAGCcGCCAg -3' miRNA: 3'- ucacCGUGGUGUGGU---UCUUCGuCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 34880 | 0.7 | 0.349776 |
Target: 5'- cGGUGGCGCCGCGgaUCGAGcacGCcGCCGa -3' miRNA: 3'- -UCACCGUGGUGU--GGUUCuu-CGuCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 30172 | 0.7 | 0.367442 |
Target: 5'- cAGuUGGCGCCagucggugaAgGCCAuGAAGUAGCCGc -3' miRNA: 3'- -UC-ACCGUGG---------UgUGGUuCUUCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 29461 | 0.69 | 0.376503 |
Target: 5'- -cUGGCACCAgGCgAcGAAGCgcgcGGCCAg -3' miRNA: 3'- ucACCGUGGUgUGgUuCUUCG----UCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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