Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26614 | 3' | -55.5 | NC_005357.1 | + | 2222 | 0.68 | 0.454171 |
Target: 5'- gGGUaGCACCACGCgCAGcAGGCGGCg- -3' miRNA: 3'- -UCAcCGUGGUGUG-GUUcUUCGUCGgu -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 2846 | 0.7 | 0.324427 |
Target: 5'- cAGcGGCGCCAgCACCAGcGAGgGGCCu -3' miRNA: 3'- -UCaCCGUGGU-GUGGUUcUUCgUCGGu -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 4429 | 0.7 | 0.349776 |
Target: 5'- ---cGUGCCGCGCCAgggGGAAGCcGCCAg -3' miRNA: 3'- ucacCGUGGUGUGGU---UCUUCGuCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 4822 | 0.66 | 0.594775 |
Target: 5'- aGGUcGGgGCCgGCGCCGucgucgaauucacGGAAaGCGGCCAg -3' miRNA: 3'- -UCA-CCgUGG-UGUGGU-------------UCUU-CGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 6369 | 0.66 | 0.595911 |
Target: 5'- cGG-GGCGCUggguuACACCAGGucGGCcGCCGc -3' miRNA: 3'- -UCaCCGUGG-----UGUGGUUCu-UCGuCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 6898 | 0.69 | 0.39507 |
Target: 5'- -cUGGCAUCGCAUCAucaGGAAauaggcauuGCGGCCGa -3' miRNA: 3'- ucACCGUGGUGUGGU---UCUU---------CGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 8278 | 0.66 | 0.583441 |
Target: 5'- --cGGCuuccaggGCCACgcuGCCGGGGcaguGCAGCCAg -3' miRNA: 3'- ucaCCG-------UGGUG---UGGUUCUu---CGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 8696 | 0.66 | 0.573277 |
Target: 5'- aGGUGuGCGCCGCGC--AGAuuGCuGCCGa -3' miRNA: 3'- -UCAC-CGUGGUGUGguUCUu-CGuCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 9253 | 0.69 | 0.414219 |
Target: 5'- cAGUu-CACCAUACCGcaGGAAGCGGUCGg -3' miRNA: 3'- -UCAccGUGGUGUGGU--UCUUCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 9447 | 0.68 | 0.433928 |
Target: 5'- uGGUcGCGuCCACGCCGAGGgccugauaGGCAGCgAa -3' miRNA: 3'- -UCAcCGU-GGUGUGGUUCU--------UCGUCGgU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 10307 | 0.67 | 0.528699 |
Target: 5'- cGG-GGUGCCACuucgccaguuucGCCAGGccGUAGCCGu -3' miRNA: 3'- -UCaCCGUGGUG------------UGGUUCuuCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 11340 | 0.69 | 0.414219 |
Target: 5'- --cGGC-CUGCACCGAGGugAGCAGCg- -3' miRNA: 3'- ucaCCGuGGUGUGGUUCU--UCGUCGgu -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 11389 | 0.66 | 0.55085 |
Target: 5'- cGGUGGCgACCugAugggCCAGGGucuugAGCAGCg- -3' miRNA: 3'- -UCACCG-UGGugU----GGUUCU-----UCGUCGgu -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 12400 | 0.69 | 0.404573 |
Target: 5'- cGUGGUguGggGCACCAAGGGcGCGGCCGu -3' miRNA: 3'- uCACCG--UggUGUGGUUCUU-CGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 12558 | 0.72 | 0.277176 |
Target: 5'- gGGUGGUGCUAgACCcguucgcAGGAAGCGGCaCAa -3' miRNA: 3'- -UCACCGUGGUgUGG-------UUCUUCGUCG-GU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 12666 | 0.67 | 0.506885 |
Target: 5'- ---cGCGCaCGCGCCuGGcAGCAGCCGa -3' miRNA: 3'- ucacCGUG-GUGUGGuUCuUCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 12839 | 0.68 | 0.443985 |
Target: 5'- -cUGGCAaaccgCGCGCCuGGgcGCGGCCGa -3' miRNA: 3'- ucACCGUg----GUGUGGuUCuuCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 13043 | 0.67 | 0.496122 |
Target: 5'- -cUGGCcuACCGCGCCGAGuccgagggcugGGGCaaGGCCAc -3' miRNA: 3'- ucACCG--UGGUGUGGUUC-----------UUCG--UCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 13573 | 0.7 | 0.349776 |
Target: 5'- cGUGGCGCgGCGCUggGAcAGCuucggcaaguccGGCCGc -3' miRNA: 3'- uCACCGUGgUGUGGuuCU-UCG------------UCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 13753 | 0.73 | 0.224349 |
Target: 5'- cGUGGCgcGCCGCGCUGGcGAGGCcGCCGg -3' miRNA: 3'- uCACCG--UGGUGUGGUU-CUUCGuCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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