Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26616 | 3' | -62.4 | NC_005357.1 | + | 813 | 0.68 | 0.217752 |
Target: 5'- aGCA-GGUGGCugggcuuGAGCGCGCGCAgagacaGCGa -3' miRNA: 3'- -UGUcCCGCCG-------UUCGCGCGCGUg-----CGCg -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 16613 | 0.68 | 0.195221 |
Target: 5'- aACGGcGGCccgguGCAgaucaacgauaccgAGCGCGC-CGCGCGCa -3' miRNA: 3'- -UGUC-CCGc----CGU--------------UCGCGCGcGUGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 29394 | 0.68 | 0.205685 |
Target: 5'- --cGGcGCGGUAGGCcagcagaaucuuggGCGCGUugcccACGCGCu -3' miRNA: 3'- uguCC-CGCCGUUCG--------------CGCGCG-----UGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 26257 | 0.68 | 0.207295 |
Target: 5'- gGCAcGGGCacccgccggccuGGUcGGCuCGCGCAuCGCGCg -3' miRNA: 3'- -UGU-CCCG------------CCGuUCGcGCGCGU-GCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 35314 | 0.68 | 0.212744 |
Target: 5'- cGCuGGGCaucacGCAGuccaucguGCGCGUGgGCGCGCc -3' miRNA: 3'- -UGuCCCGc----CGUU--------CGCGCGCgUGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 2235 | 0.68 | 0.218315 |
Target: 5'- cGCAGcaGGCGGC--GCGUG-GC-CGCGCa -3' miRNA: 3'- -UGUC--CCGCCGuuCGCGCgCGuGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 9977 | 0.68 | 0.223435 |
Target: 5'- aGCAGGaaaCGGUGAGCGUggcggggucgaaaGUGC-CGCGCg -3' miRNA: 3'- -UGUCCc--GCCGUUCGCG-------------CGCGuGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 8143 | 0.68 | 0.22401 |
Target: 5'- --uGGGCGuGCGGGUgucgGCGCugcgucccuGCGCGUGCg -3' miRNA: 3'- uguCCCGC-CGUUCG----CGCG---------CGUGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 8284 | 0.69 | 0.174291 |
Target: 5'- cCAGGGCcacgcugccggGGCAgugcagccagcGGUGCGCGCugcucggggaaaguuGCGCGUg -3' miRNA: 3'- uGUCCCG-----------CCGU-----------UCGCGCGCG---------------UGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 27309 | 0.69 | 0.19167 |
Target: 5'- cAUGGGGUcgggccugguaGGCAgcuauuacGGCGCGCGguCGCaGCa -3' miRNA: 3'- -UGUCCCG-----------CCGU--------UCGCGCGCguGCG-CG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 34257 | 0.69 | 0.186695 |
Target: 5'- ---cGGCaGCAucCGgGCGCACGCGCa -3' miRNA: 3'- ugucCCGcCGUucGCgCGCGUGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 34700 | 0.69 | 0.177087 |
Target: 5'- cGCAGGaaUGGCAAGCG-GUGCAgGCGg -3' miRNA: 3'- -UGUCCc-GCCGUUCGCgCGCGUgCGCg -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 39676 | 0.69 | 0.16792 |
Target: 5'- gGCAGuGGuCGGCAcgcccgagcAGCGcCGgGC-CGCGCu -3' miRNA: 3'- -UGUC-CC-GCCGU---------UCGC-GCgCGuGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 17710 | 0.69 | 0.172449 |
Target: 5'- cCGGGaaaugcccaucGCGGCAAGCuGCGCGCAUuuggugGCGa -3' miRNA: 3'- uGUCC-----------CGCCGUUCG-CGCGCGUG------CGCg -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 17765 | 0.69 | 0.177087 |
Target: 5'- uGCAGuucgaGCaGCGAGuCGCGCGCgaacggauagaaGCGCGCg -3' miRNA: 3'- -UGUCc----CGcCGUUC-GCGCGCG------------UGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 7414 | 0.69 | 0.183765 |
Target: 5'- gACAGGGUauaGaGC-AGCGgGCGCccggacacuuccucgACGCGCg -3' miRNA: 3'- -UGUCCCG---C-CGuUCGCgCGCG---------------UGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 10858 | 0.69 | 0.186695 |
Target: 5'- aGCAGGcccugcGUGGCuucggucGGCGCGaUGCGCGCGg -3' miRNA: 3'- -UGUCC------CGCCGu------UCGCGC-GCGUGCGCg -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 30912 | 0.69 | 0.181355 |
Target: 5'- cGCAGGGCcucacgccaGcGCAGGCGCGCccuuugcggugucGCAgGCGa -3' miRNA: 3'- -UGUCCCG---------C-CGUUCGCGCG-------------CGUgCGCg -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 392 | 0.69 | 0.177087 |
Target: 5'- -gAGcGCGGCcAGCGCGCgacuguugagcaGCACGuCGCg -3' miRNA: 3'- ugUCcCGCCGuUCGCGCG------------CGUGC-GCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 14852 | 0.7 | 0.146842 |
Target: 5'- ---uGGCGGCcAGCGC-CGCACGCuggGCg -3' miRNA: 3'- ugucCCGCCGuUCGCGcGCGUGCG---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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