miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 2235 0.68 0.218315
Target:  5'- cGCAGcaGGCGGC--GCGUG-GC-CGCGCa -3'
miRNA:   3'- -UGUC--CCGCCGuuCGCGCgCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 813 0.68 0.217752
Target:  5'- aGCA-GGUGGCugggcuuGAGCGCGCGCAgagacaGCGa -3'
miRNA:   3'- -UGUcCCGCCG-------UUCGCGCGCGUg-----CGCg -5'
26616 3' -62.4 NC_005357.1 + 35314 0.68 0.212744
Target:  5'- cGCuGGGCaucacGCAGuccaucguGCGCGUGgGCGCGCc -3'
miRNA:   3'- -UGuCCCGc----CGUU--------CGCGCGCgUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 9206 0.68 0.212744
Target:  5'- uGCucGGCGGCGcGGCGCaCGUucugcgGCGCGCc -3'
miRNA:   3'- -UGucCCGCCGU-UCGCGcGCG------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 28004 0.68 0.207295
Target:  5'- aACAcGGuGCcGCAGGCGCGC-CugGCGa -3'
miRNA:   3'- -UGU-CC-CGcCGUUCGCGCGcGugCGCg -5'
26616 3' -62.4 NC_005357.1 + 26257 0.68 0.207295
Target:  5'- gGCAcGGGCacccgccggccuGGUcGGCuCGCGCAuCGCGCg -3'
miRNA:   3'- -UGU-CCCG------------CCGuUCGcGCGCGU-GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 29394 0.68 0.205685
Target:  5'- --cGGcGCGGUAGGCcagcagaaucuuggGCGCGUugcccACGCGCu -3'
miRNA:   3'- uguCC-CGCCGUUCG--------------CGCGCG-----UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 16613 0.68 0.195221
Target:  5'- aACGGcGGCccgguGCAgaucaacgauaccgAGCGCGC-CGCGCGCa -3'
miRNA:   3'- -UGUC-CCGc----CGU--------------UCGCGCGcGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 27309 0.69 0.19167
Target:  5'- cAUGGGGUcgggccugguaGGCAgcuauuacGGCGCGCGguCGCaGCa -3'
miRNA:   3'- -UGUCCCG-----------CCGU--------UCGCGCGCguGCG-CG- -5'
26616 3' -62.4 NC_005357.1 + 10858 0.69 0.186695
Target:  5'- aGCAGGcccugcGUGGCuucggucGGCGCGaUGCGCGCGg -3'
miRNA:   3'- -UGUCC------CGCCGu------UCGCGC-GCGUGCGCg -5'
26616 3' -62.4 NC_005357.1 + 34257 0.69 0.186695
Target:  5'- ---cGGCaGCAucCGgGCGCACGCGCa -3'
miRNA:   3'- ugucCCGcCGUucGCgCGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 7414 0.69 0.183765
Target:  5'- gACAGGGUauaGaGC-AGCGgGCGCccggacacuuccucgACGCGCg -3'
miRNA:   3'- -UGUCCCG---C-CGuUCGCgCGCG---------------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 30912 0.69 0.181355
Target:  5'- cGCAGGGCcucacgccaGcGCAGGCGCGCccuuugcggugucGCAgGCGa -3'
miRNA:   3'- -UGUCCCG---------C-CGUUCGCGCG-------------CGUgCGCg -5'
26616 3' -62.4 NC_005357.1 + 34700 0.69 0.177087
Target:  5'- cGCAGGaaUGGCAAGCG-GUGCAgGCGg -3'
miRNA:   3'- -UGUCCc-GCCGUUCGCgCGCGUgCGCg -5'
26616 3' -62.4 NC_005357.1 + 392 0.69 0.177087
Target:  5'- -gAGcGCGGCcAGCGCGCgacuguugagcaGCACGuCGCg -3'
miRNA:   3'- ugUCcCGCCGuUCGCGCG------------CGUGC-GCG- -5'
26616 3' -62.4 NC_005357.1 + 17765 0.69 0.177087
Target:  5'- uGCAGuucgaGCaGCGAGuCGCGCGCgaacggauagaaGCGCGCg -3'
miRNA:   3'- -UGUCc----CGcCGUUC-GCGCGCG------------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 8284 0.69 0.174291
Target:  5'- cCAGGGCcacgcugccggGGCAgugcagccagcGGUGCGCGCugcucggggaaaguuGCGCGUg -3'
miRNA:   3'- uGUCCCG-----------CCGU-----------UCGCGCGCG---------------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 17710 0.69 0.172449
Target:  5'- cCGGGaaaugcccaucGCGGCAAGCuGCGCGCAUuuggugGCGa -3'
miRNA:   3'- uGUCC-----------CGCCGUUCG-CGCGCGUG------CGCg -5'
26616 3' -62.4 NC_005357.1 + 39676 0.69 0.16792
Target:  5'- gGCAGuGGuCGGCAcgcccgagcAGCGcCGgGC-CGCGCu -3'
miRNA:   3'- -UGUC-CC-GCCGU---------UCGC-GCgCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14219 0.7 0.165254
Target:  5'- cGCAGcGCGGCuuccuuggcgcgguuAAGUGCGuCGUccACGCGCa -3'
miRNA:   3'- -UGUCcCGCCG---------------UUCGCGC-GCG--UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.