miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26617 3' -55 NC_005357.1 + 40052 1.13 0.000487
Target:  5'- gCCAUGCCGUGCGCCUCGAACCGUUGCc -3'
miRNA:   3'- -GGUACGGCACGCGGAGCUUGGCAACG- -5'
26617 3' -55 NC_005357.1 + 23756 0.84 0.054679
Target:  5'- gCCAUGCCG-GCGCCacCGGGCCGaUGCg -3'
miRNA:   3'- -GGUACGGCaCGCGGa-GCUUGGCaACG- -5'
26617 3' -55 NC_005357.1 + 10503 0.74 0.256825
Target:  5'- gCGUGUCGagcaGCGCCUCGAaacGCCGcagGCa -3'
miRNA:   3'- gGUACGGCa---CGCGGAGCU---UGGCaa-CG- -5'
26617 3' -55 NC_005357.1 + 3784 0.73 0.299452
Target:  5'- gUCGUGCCGaaagccaGCGCCUgGAAUuCGUUGUa -3'
miRNA:   3'- -GGUACGGCa------CGCGGAgCUUG-GCAACG- -5'
26617 3' -55 NC_005357.1 + 12297 0.72 0.347352
Target:  5'- gCGUGCCGgcuacgGCgGCgUCGAAUuCGUUGCu -3'
miRNA:   3'- gGUACGGCa-----CG-CGgAGCUUG-GCAACG- -5'
26617 3' -55 NC_005357.1 + 14719 0.7 0.419314
Target:  5'- uCCAUGCCcUGCGCC-CGGuaGCCccagGCa -3'
miRNA:   3'- -GGUACGGcACGCGGaGCU--UGGcaa-CG- -5'
26617 3' -55 NC_005357.1 + 8985 0.7 0.438668
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5'
26617 3' -55 NC_005357.1 + 8938 0.7 0.438668
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5'
26617 3' -55 NC_005357.1 + 15851 0.7 0.438668
Target:  5'- uCCGUGUCGUGCugguGCCacgcgcCGAuCUGUUGCu -3'
miRNA:   3'- -GGUACGGCACG----CGGa-----GCUuGGCAACG- -5'
26617 3' -55 NC_005357.1 + 34873 0.7 0.448535
Target:  5'- uCCAaGCCGgugGCGCCgCGGAUCGa-GCa -3'
miRNA:   3'- -GGUaCGGCa--CGCGGaGCUUGGCaaCG- -5'
26617 3' -55 NC_005357.1 + 8415 0.69 0.488137
Target:  5'- gCCAggGCCGUGCgcuugucuacgGCCUUGAggcuuugGCCcUUGCg -3'
miRNA:   3'- -GGUa-CGGCACG-----------CGGAGCU-------UGGcAACG- -5'
26617 3' -55 NC_005357.1 + 19484 0.69 0.498557
Target:  5'- gCCAggUGCCGguggGCagGCCgcugCGAACCGUggucuugUGCu -3'
miRNA:   3'- -GGU--ACGGCa---CG--CGGa---GCUUGGCA-------ACG- -5'
26617 3' -55 NC_005357.1 + 10928 0.69 0.499605
Target:  5'- ---cGCCGguuugcaGgGCCUCGGGCaGUUGCg -3'
miRNA:   3'- gguaCGGCa------CgCGGAGCUUGgCAACG- -5'
26617 3' -55 NC_005357.1 + 4311 0.69 0.506964
Target:  5'- aCCAgcuUGCCGUugaccuccacgaugGUgccaGCCUUGAugcugGCCGUUGCg -3'
miRNA:   3'- -GGU---ACGGCA--------------CG----CGGAGCU-----UGGCAACG- -5'
26617 3' -55 NC_005357.1 + 20739 0.68 0.531455
Target:  5'- aCAUGCUGcugGCGCCguaGAGgCGcUGCg -3'
miRNA:   3'- gGUACGGCa--CGCGGag-CUUgGCaACG- -5'
26617 3' -55 NC_005357.1 + 38167 0.68 0.553093
Target:  5'- aCCAUGCCG-GCGCUgacGGCCG--GCa -3'
miRNA:   3'- -GGUACGGCaCGCGGagcUUGGCaaCG- -5'
26617 3' -55 NC_005357.1 + 31514 0.68 0.564011
Target:  5'- gCGUGCUGcUGgGCCUCGcugUGUUGCc -3'
miRNA:   3'- gGUACGGC-ACgCGGAGCuugGCAACG- -5'
26617 3' -55 NC_005357.1 + 13383 0.68 0.574986
Target:  5'- gCCAUGCCcaGCGCgCgguuguaggCGGcAUCGUUGCg -3'
miRNA:   3'- -GGUACGGcaCGCG-Ga--------GCU-UGGCAACG- -5'
26617 3' -55 NC_005357.1 + 9033 0.68 0.586009
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26617 3' -55 NC_005357.1 + 8024 0.68 0.586009
Target:  5'- gCCAgcuucGCCgGUGacaGCCUCGAcgcucaACCGcUGCu -3'
miRNA:   3'- -GGUa----CGG-CACg--CGGAGCU------UGGCaACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.