miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26617 3' -55 NC_005357.1 + 1708 0.67 0.619278
Target:  5'- ---cGCCGUGgGCCggCGuGCCGgcgaggGCg -3'
miRNA:   3'- gguaCGGCACgCGGa-GCuUGGCaa----CG- -5'
26617 3' -55 NC_005357.1 + 1758 0.66 0.692434
Target:  5'- gUCAUgGCCGgccUGCGCCuggcgcgUCGGGCCGauacguucgaugauUUGCu -3'
miRNA:   3'- -GGUA-CGGC---ACGCGG-------AGCUUGGC--------------AACG- -5'
26617 3' -55 NC_005357.1 + 2761 0.65 0.707728
Target:  5'- gCGUGCCGaccacUGCcgacaCCUCGA--CGUUGCg -3'
miRNA:   3'- gGUACGGC-----ACGc----GGAGCUugGCAACG- -5'
26617 3' -55 NC_005357.1 + 3727 0.67 0.597071
Target:  5'- cCCGUGCCGUucaCGCCgguggUGGGCaCGUcggUGCc -3'
miRNA:   3'- -GGUACGGCAc--GCGGa----GCUUG-GCA---ACG- -5'
26617 3' -55 NC_005357.1 + 3784 0.73 0.299452
Target:  5'- gUCGUGCCGaaagccaGCGCCUgGAAUuCGUUGUa -3'
miRNA:   3'- -GGUACGGCa------CGCGGAgCUUG-GCAACG- -5'
26617 3' -55 NC_005357.1 + 4262 0.67 0.619278
Target:  5'- gCcgGCCGUcaGCGCCggcauggUGAugGCCGUgucgGCg -3'
miRNA:   3'- gGuaCGGCA--CGCGGa------GCU--UGGCAa---CG- -5'
26617 3' -55 NC_005357.1 + 4311 0.69 0.506964
Target:  5'- aCCAgcuUGCCGUugaccuccacgaugGUgccaGCCUUGAugcugGCCGUUGCg -3'
miRNA:   3'- -GGU---ACGGCA--------------CG----CGGAGCU-----UGGCAACG- -5'
26617 3' -55 NC_005357.1 + 7534 0.65 0.707728
Target:  5'- aCCGUGCgcuCGgcgGCGUgCUCGAuCCGcgGCg -3'
miRNA:   3'- -GGUACG---GCa--CGCG-GAGCUuGGCaaCG- -5'
26617 3' -55 NC_005357.1 + 8024 0.68 0.586009
Target:  5'- gCCAgcuucGCCgGUGacaGCCUCGAcgcucaACCGcUGCu -3'
miRNA:   3'- -GGUa----CGG-CACg--CGGAGCU------UGGCaACG- -5'
26617 3' -55 NC_005357.1 + 8168 0.67 0.608164
Target:  5'- uCCcUGCgCGUGCGCC-CGGauGCUGccgGCg -3'
miRNA:   3'- -GGuACG-GCACGCGGaGCU--UGGCaa-CG- -5'
26617 3' -55 NC_005357.1 + 8415 0.69 0.488137
Target:  5'- gCCAggGCCGUGCgcuugucuacgGCCUUGAggcuuugGCCcUUGCg -3'
miRNA:   3'- -GGUa-CGGCACG-----------CGGAGCU-------UGGcAACG- -5'
26617 3' -55 NC_005357.1 + 8938 0.7 0.438668
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5'
26617 3' -55 NC_005357.1 + 8985 0.7 0.438668
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5'
26617 3' -55 NC_005357.1 + 9033 0.68 0.586009
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26617 3' -55 NC_005357.1 + 9081 0.68 0.586009
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26617 3' -55 NC_005357.1 + 9129 0.68 0.586009
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26617 3' -55 NC_005357.1 + 9177 0.68 0.586009
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26617 3' -55 NC_005357.1 + 9225 0.66 0.663747
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGU-GCc -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAaCG- -5'
26617 3' -55 NC_005357.1 + 9580 0.66 0.696817
Target:  5'- ---cGCCGaccgucUGCgGCCaggCGaAGCCGUUGCg -3'
miRNA:   3'- gguaCGGC------ACG-CGGa--GC-UUGGCAACG- -5'
26617 3' -55 NC_005357.1 + 10503 0.74 0.256825
Target:  5'- gCGUGUCGagcaGCGCCUCGAaacGCCGcagGCa -3'
miRNA:   3'- gGUACGGCa---CGCGGAGCU---UGGCaa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.