Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26617 | 3' | -55 | NC_005357.1 | + | 41748 | 0.66 | 0.674815 |
Target: 5'- gCCcgGCCG-GCGCC----GCCGUagGCg -3' miRNA: 3'- -GGuaCGGCaCGCGGagcuUGGCAa-CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 40162 | 0.67 | 0.607053 |
Target: 5'- cCCAUcgucaacGUgGUGCGCgUCGAACUGccgGCc -3' miRNA: 3'- -GGUA-------CGgCACGCGgAGCUUGGCaa-CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 40052 | 1.13 | 0.000487 |
Target: 5'- gCCAUGCCGUGCGCCUCGAACCGUUGCc -3' miRNA: 3'- -GGUACGGCACGCGGAGCUUGGCAACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 38167 | 0.68 | 0.553093 |
Target: 5'- aCCAUGCCG-GCGCUgacGGCCG--GCa -3' miRNA: 3'- -GGUACGGCaCGCGGagcUUGGCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 36864 | 0.66 | 0.696817 |
Target: 5'- gCCAgcGuuG-GCGCCgUCGAuACCGUgGCg -3' miRNA: 3'- -GGUa-CggCaCGCGG-AGCU-UGGCAaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 36087 | 0.66 | 0.674815 |
Target: 5'- uUCggGCCGgGCGCUUUG-GCUGggGCg -3' miRNA: 3'- -GGuaCGGCaCGCGGAGCuUGGCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 34873 | 0.7 | 0.448535 |
Target: 5'- uCCAaGCCGgugGCGCCgCGGAUCGa-GCa -3' miRNA: 3'- -GGUaCGGCa--CGCGGaGCUUGGCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 34661 | 0.66 | 0.685843 |
Target: 5'- ---cGCCG-GCGCagaUCGcGCCGgUGCu -3' miRNA: 3'- gguaCGGCaCGCGg--AGCuUGGCaACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 34585 | 0.66 | 0.663747 |
Target: 5'- uUCAaGCgCGUGCGCCUgGucAUCGU-GCa -3' miRNA: 3'- -GGUaCG-GCACGCGGAgCu-UGGCAaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 34236 | 0.66 | 0.652648 |
Target: 5'- ---gGCCGUGCGCgaUGAaaucGCCGgcaGCa -3' miRNA: 3'- gguaCGGCACGCGgaGCU----UGGCaa-CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 33051 | 0.67 | 0.64153 |
Target: 5'- cCCGcgugcUGUCGUGCGCUucaUCGggUCGc-GCa -3' miRNA: 3'- -GGU-----ACGGCACGCGG---AGCuuGGCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 31514 | 0.68 | 0.564011 |
Target: 5'- gCGUGCUGcUGgGCCUCGcugUGUUGCc -3' miRNA: 3'- gGUACGGC-ACgCGGAGCuugGCAACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 30295 | 0.66 | 0.674815 |
Target: 5'- ---cGUCGgguaGCGCCccugCGAGCCGcuUUGCg -3' miRNA: 3'- gguaCGGCa---CGCGGa---GCUUGGC--AACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 28665 | 0.67 | 0.64153 |
Target: 5'- uCgGUGCCG-GCgGCCUCGccAGCgCGgcGCg -3' miRNA: 3'- -GgUACGGCaCG-CGGAGC--UUG-GCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 28275 | 0.66 | 0.685843 |
Target: 5'- aCCAUGaCCGcGCGCUg-GGACaCGgcGCa -3' miRNA: 3'- -GGUAC-GGCaCGCGGagCUUG-GCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 27498 | 0.67 | 0.64153 |
Target: 5'- -gAUGCCG-GCgGCCUCG-GCCGccaGCu -3' miRNA: 3'- ggUACGGCaCG-CGGAGCuUGGCaa-CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 26653 | 0.67 | 0.608164 |
Target: 5'- uCUAUGCCGUcGUGCgUCGcACCauugGCg -3' miRNA: 3'- -GGUACGGCA-CGCGgAGCuUGGcaa-CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 23756 | 0.84 | 0.054679 |
Target: 5'- gCCAUGCCG-GCGCCacCGGGCCGaUGCg -3' miRNA: 3'- -GGUACGGCaCGCGGa-GCUUGGCaACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 23714 | 0.67 | 0.608164 |
Target: 5'- cCCGUGCCGccguaccgaUGCGCUgcugCuGACCGagGCc -3' miRNA: 3'- -GGUACGGC---------ACGCGGa---GcUUGGCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 23013 | 0.67 | 0.597071 |
Target: 5'- gCC-UGCUGcUGCGCCUgcuguUGGGCUuGUUGCu -3' miRNA: 3'- -GGuACGGC-ACGCGGA-----GCUUGG-CAACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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