miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26617 3' -55 NC_005357.1 + 10928 0.69 0.499605
Target:  5'- ---cGCCGguuugcaGgGCCUCGGGCaGUUGCg -3'
miRNA:   3'- gguaCGGCa------CgCGGAGCUUGgCAACG- -5'
26617 3' -55 NC_005357.1 + 12297 0.72 0.347352
Target:  5'- gCGUGCCGgcuacgGCgGCgUCGAAUuCGUUGCu -3'
miRNA:   3'- gGUACGGCa-----CG-CGgAGCUUG-GCAACG- -5'
26617 3' -55 NC_005357.1 + 13383 0.68 0.574986
Target:  5'- gCCAUGCCcaGCGCgCgguuguaggCGGcAUCGUUGCg -3'
miRNA:   3'- -GGUACGGcaCGCG-Ga--------GCU-UGGCAACG- -5'
26617 3' -55 NC_005357.1 + 14716 0.67 0.64153
Target:  5'- uCCAUGaCCG-GCGg--CGAGCCGcUGCc -3'
miRNA:   3'- -GGUAC-GGCaCGCggaGCUUGGCaACG- -5'
26617 3' -55 NC_005357.1 + 14719 0.7 0.419314
Target:  5'- uCCAUGCCcUGCGCC-CGGuaGCCccagGCa -3'
miRNA:   3'- -GGUACGGcACGCGGaGCU--UGGcaa-CG- -5'
26617 3' -55 NC_005357.1 + 15138 0.66 0.652648
Target:  5'- cCCAUGCUGgcggcggaUGCGCCcagggCGAcgGCUgauGUUGCu -3'
miRNA:   3'- -GGUACGGC--------ACGCGGa----GCU--UGG---CAACG- -5'
26617 3' -55 NC_005357.1 + 15851 0.7 0.438668
Target:  5'- uCCGUGUCGUGCugguGCCacgcgcCGAuCUGUUGCu -3'
miRNA:   3'- -GGUACGGCACG----CGGa-----GCUuGGCAACG- -5'
26617 3' -55 NC_005357.1 + 19004 0.66 0.685843
Target:  5'- uCCcgGCCG-GCGUCgcaCuGACCGgcGCg -3'
miRNA:   3'- -GGuaCGGCaCGCGGa--GcUUGGCaaCG- -5'
26617 3' -55 NC_005357.1 + 19484 0.69 0.498557
Target:  5'- gCCAggUGCCGguggGCagGCCgcugCGAACCGUggucuugUGCu -3'
miRNA:   3'- -GGU--ACGGCa---CG--CGGa---GCUUGGCA-------ACG- -5'
26617 3' -55 NC_005357.1 + 19875 0.67 0.597071
Target:  5'- gCGUGCCGaaggcgucgcGCGCCUUcuuGGCCGUgGCa -3'
miRNA:   3'- gGUACGGCa---------CGCGGAGc--UUGGCAaCG- -5'
26617 3' -55 NC_005357.1 + 20739 0.68 0.531455
Target:  5'- aCAUGCUGcugGCGCCguaGAGgCGcUGCg -3'
miRNA:   3'- gGUACGGCa--CGCGGag-CUUgGCaACG- -5'
26617 3' -55 NC_005357.1 + 21852 0.67 0.64153
Target:  5'- ---gGCC-UGCGCCUUGcGCaGUUGCu -3'
miRNA:   3'- gguaCGGcACGCGGAGCuUGgCAACG- -5'
26617 3' -55 NC_005357.1 + 22978 0.66 0.652648
Target:  5'- aCUAUGgCGUGCaGCC-CGAgaagucccgcACCGU-GCa -3'
miRNA:   3'- -GGUACgGCACG-CGGaGCU----------UGGCAaCG- -5'
26617 3' -55 NC_005357.1 + 23013 0.67 0.597071
Target:  5'- gCC-UGCUGcUGCGCCUgcuguUGGGCUuGUUGCu -3'
miRNA:   3'- -GGuACGGC-ACGCGGA-----GCUUGG-CAACG- -5'
26617 3' -55 NC_005357.1 + 23714 0.67 0.608164
Target:  5'- cCCGUGCCGccguaccgaUGCGCUgcugCuGACCGagGCc -3'
miRNA:   3'- -GGUACGGC---------ACGCGGa---GcUUGGCaaCG- -5'
26617 3' -55 NC_005357.1 + 23756 0.84 0.054679
Target:  5'- gCCAUGCCG-GCGCCacCGGGCCGaUGCg -3'
miRNA:   3'- -GGUACGGCaCGCGGa-GCUUGGCaACG- -5'
26617 3' -55 NC_005357.1 + 26653 0.67 0.608164
Target:  5'- uCUAUGCCGUcGUGCgUCGcACCauugGCg -3'
miRNA:   3'- -GGUACGGCA-CGCGgAGCuUGGcaa-CG- -5'
26617 3' -55 NC_005357.1 + 27498 0.67 0.64153
Target:  5'- -gAUGCCG-GCgGCCUCG-GCCGccaGCu -3'
miRNA:   3'- ggUACGGCaCG-CGGAGCuUGGCaa-CG- -5'
26617 3' -55 NC_005357.1 + 28275 0.66 0.685843
Target:  5'- aCCAUGaCCGcGCGCUg-GGACaCGgcGCa -3'
miRNA:   3'- -GGUAC-GGCaCGCGGagCUUG-GCaaCG- -5'
26617 3' -55 NC_005357.1 + 28665 0.67 0.64153
Target:  5'- uCgGUGCCG-GCgGCCUCGccAGCgCGgcGCg -3'
miRNA:   3'- -GgUACGGCaCG-CGGAGC--UUG-GCaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.