Results 21 - 40 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26617 | 3' | -55 | NC_005357.1 | + | 14719 | 0.7 | 0.419314 |
Target: 5'- uCCAUGCCcUGCGCC-CGGuaGCCccagGCa -3' miRNA: 3'- -GGUACGGcACGCGGaGCU--UGGcaa-CG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 15851 | 0.7 | 0.438668 |
Target: 5'- uCCGUGUCGUGCugguGCCacgcgcCGAuCUGUUGCu -3' miRNA: 3'- -GGUACGGCACG----CGGa-----GCUuGGCAACG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 34873 | 0.7 | 0.448535 |
Target: 5'- uCCAaGCCGgugGCGCCgCGGAUCGa-GCa -3' miRNA: 3'- -GGUaCGGCa--CGCGGaGCUUGGCaaCG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 8415 | 0.69 | 0.488137 |
Target: 5'- gCCAggGCCGUGCgcuugucuacgGCCUUGAggcuuugGCCcUUGCg -3' miRNA: 3'- -GGUa-CGGCACG-----------CGGAGCU-------UGGcAACG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 13383 | 0.68 | 0.574986 |
Target: 5'- gCCAUGCCcaGCGCgCgguuguaggCGGcAUCGUUGCg -3' miRNA: 3'- -GGUACGGcaCGCG-Ga--------GCU-UGGCAACG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 31514 | 0.68 | 0.564011 |
Target: 5'- gCGUGCUGcUGgGCCUCGcugUGUUGCc -3' miRNA: 3'- gGUACGGC-ACgCGGAGCuugGCAACG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 20739 | 0.68 | 0.531455 |
Target: 5'- aCAUGCUGcugGCGCCguaGAGgCGcUGCg -3' miRNA: 3'- gGUACGGCa--CGCGGag-CUUgGCaACG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 4311 | 0.69 | 0.506964 |
Target: 5'- aCCAgcuUGCCGUugaccuccacgaugGUgccaGCCUUGAugcugGCCGUUGCg -3' miRNA: 3'- -GGU---ACGGCA--------------CG----CGGAGCU-----UGGCAACG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 10928 | 0.69 | 0.499605 |
Target: 5'- ---cGCCGguuugcaGgGCCUCGGGCaGUUGCg -3' miRNA: 3'- gguaCGGCa------CgCGGAGCUUGgCAACG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 19484 | 0.69 | 0.498557 |
Target: 5'- gCCAggUGCCGguggGCagGCCgcugCGAACCGUggucuugUGCu -3' miRNA: 3'- -GGU--ACGGCa---CG--CGGa---GCUUGGCA-------ACG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 26653 | 0.67 | 0.608164 |
Target: 5'- uCUAUGCCGUcGUGCgUCGcACCauugGCg -3' miRNA: 3'- -GGUACGGCA-CGCGgAGCuUGGcaa-CG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 9177 | 0.68 | 0.586009 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 9129 | 0.68 | 0.586009 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 9081 | 0.68 | 0.586009 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 9033 | 0.68 | 0.586009 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 8024 | 0.68 | 0.586009 |
Target: 5'- gCCAgcuucGCCgGUGacaGCCUCGAcgcucaACCGcUGCu -3' miRNA: 3'- -GGUa----CGG-CACg--CGGAGCU------UGGCaACG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 38167 | 0.68 | 0.553093 |
Target: 5'- aCCAUGCCG-GCGCUgacGGCCG--GCa -3' miRNA: 3'- -GGUACGGCaCGCGGagcUUGGCaaCG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 8985 | 0.7 | 0.438668 |
Target: 5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 8938 | 0.7 | 0.438668 |
Target: 5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5' |
|||||||
26617 | 3' | -55 | NC_005357.1 | + | 7534 | 0.65 | 0.707728 |
Target: 5'- aCCGUGCgcuCGgcgGCGUgCUCGAuCCGcgGCg -3' miRNA: 3'- -GGUACG---GCa--CGCG-GAGCUuGGCaaCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home