miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26619 3' -54.4 NC_005357.1 + 25038 0.66 0.718574
Target:  5'- --aAUCGaAGCGgugcGUCGGCgCGAUGCa -3'
miRNA:   3'- uagUAGC-UUGCa---UAGCCGgGCUGCGc -5'
26619 3' -54.4 NC_005357.1 + 40181 0.66 0.712028
Target:  5'- -gCGUCGAACugccggccaaGGCCCGGCGUu -3'
miRNA:   3'- uaGUAGCUUGcauag-----CCGGGCUGCGc -5'
26619 3' -54.4 NC_005357.1 + 18653 0.66 0.706549
Target:  5'- cAUCuUCGuagccgcGGCGcAUCGGCCCgGugGCGc -3'
miRNA:   3'- -UAGuAGC-------UUGCaUAGCCGGG-CugCGC- -5'
26619 3' -54.4 NC_005357.1 + 26230 0.66 0.696642
Target:  5'- cGUCuUCGGgcgaauggcGCGUggcGUCGGUgaacuCCGACGCGg -3'
miRNA:   3'- -UAGuAGCU---------UGCA---UAGCCG-----GGCUGCGC- -5'
26619 3' -54.4 NC_005357.1 + 27025 0.67 0.65209
Target:  5'- -gCAUCGGuCGUccggcaucuucGcCGGCCCGcACGCGg -3'
miRNA:   3'- uaGUAGCUuGCA-----------UaGCCGGGC-UGCGC- -5'
26619 3' -54.4 NC_005357.1 + 9858 0.67 0.65209
Target:  5'- cGUCGaUGAGCGU---GGCaCCGGCGCGc -3'
miRNA:   3'- -UAGUaGCUUGCAuagCCG-GGCUGCGC- -5'
26619 3' -54.4 NC_005357.1 + 10850 0.67 0.650969
Target:  5'- gGUgGUCGAgcaggcccuGCGUggcuucgGUCGGCgCGAUGCGc -3'
miRNA:   3'- -UAgUAGCU---------UGCA-------UAGCCGgGCUGCGC- -5'
26619 3' -54.4 NC_005357.1 + 5281 0.67 0.640876
Target:  5'- gAUguUCGcGGCGuUGUCGGCCaCGGCGuCGa -3'
miRNA:   3'- -UAguAGC-UUGC-AUAGCCGG-GCUGC-GC- -5'
26619 3' -54.4 NC_005357.1 + 11075 0.67 0.640876
Target:  5'- ---cUCGAACGUGUcCGGgUCGcGCGCGa -3'
miRNA:   3'- uaguAGCUUGCAUA-GCCgGGC-UGCGC- -5'
26619 3' -54.4 NC_005357.1 + 38677 0.67 0.640876
Target:  5'- -aCGUCcAGCGg--CGGCaCCGACGUGc -3'
miRNA:   3'- uaGUAGcUUGCauaGCCG-GGCUGCGC- -5'
26619 3' -54.4 NC_005357.1 + 18130 0.67 0.629654
Target:  5'- -aCGUCGAACuUGUC-GCCCGGCucGCGc -3'
miRNA:   3'- uaGUAGCUUGcAUAGcCGGGCUG--CGC- -5'
26619 3' -54.4 NC_005357.1 + 7153 0.68 0.596041
Target:  5'- cUCAU--GACGUugaagcccaGGCCCGACGCGc -3'
miRNA:   3'- uAGUAgcUUGCAuag------CCGGGCUGCGC- -5'
26619 3' -54.4 NC_005357.1 + 6995 0.68 0.596041
Target:  5'- uUCAcacgcgCGAGCGgGUCGGCUCG-CGUGa -3'
miRNA:   3'- uAGUa-----GCUUGCaUAGCCGGGCuGCGC- -5'
26619 3' -54.4 NC_005357.1 + 29079 0.68 0.573776
Target:  5'- gGUCAuccUCGGGCGccgagGUCaGGCCCG-UGCGg -3'
miRNA:   3'- -UAGU---AGCUUGCa----UAG-CCGGGCuGCGC- -5'
26619 3' -54.4 NC_005357.1 + 41872 0.68 0.562713
Target:  5'- cAUgGUCGAgGCGUGguuuuucagCGGCCCG-CGCa -3'
miRNA:   3'- -UAgUAGCU-UGCAUa--------GCCGGGCuGCGc -5'
26619 3' -54.4 NC_005357.1 + 26748 0.68 0.562713
Target:  5'- uUCGUCGAuag---CGGCCUGACGUa -3'
miRNA:   3'- uAGUAGCUugcauaGCCGGGCUGCGc -5'
26619 3' -54.4 NC_005357.1 + 2728 0.69 0.540771
Target:  5'- ----cCGGACGcuugagcgCGGCCCGGCGCu -3'
miRNA:   3'- uaguaGCUUGCaua-----GCCGGGCUGCGc -5'
26619 3' -54.4 NC_005357.1 + 35695 0.69 0.540771
Target:  5'- -cUAUUGAGCGcggCGGCCCaGCGCa -3'
miRNA:   3'- uaGUAGCUUGCauaGCCGGGcUGCGc -5'
26619 3' -54.4 NC_005357.1 + 15258 0.69 0.539681
Target:  5'- gGUCGUCGAggcauccGCGUG-CGGCgCGugGgGg -3'
miRNA:   3'- -UAGUAGCU-------UGCAUaGCCGgGCugCgC- -5'
26619 3' -54.4 NC_005357.1 + 11242 0.69 0.508427
Target:  5'- cGUCAggcaGAACGUGcgCGGCCCG-UGCu -3'
miRNA:   3'- -UAGUag--CUUGCAUa-GCCGGGCuGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.