Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26619 | 3' | -54.4 | NC_005357.1 | + | 25038 | 0.66 | 0.718574 |
Target: 5'- --aAUCGaAGCGgugcGUCGGCgCGAUGCa -3' miRNA: 3'- uagUAGC-UUGCa---UAGCCGgGCUGCGc -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 40181 | 0.66 | 0.712028 |
Target: 5'- -gCGUCGAACugccggccaaGGCCCGGCGUu -3' miRNA: 3'- uaGUAGCUUGcauag-----CCGGGCUGCGc -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 18653 | 0.66 | 0.706549 |
Target: 5'- cAUCuUCGuagccgcGGCGcAUCGGCCCgGugGCGc -3' miRNA: 3'- -UAGuAGC-------UUGCaUAGCCGGG-CugCGC- -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 26230 | 0.66 | 0.696642 |
Target: 5'- cGUCuUCGGgcgaauggcGCGUggcGUCGGUgaacuCCGACGCGg -3' miRNA: 3'- -UAGuAGCU---------UGCA---UAGCCG-----GGCUGCGC- -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 9858 | 0.67 | 0.65209 |
Target: 5'- cGUCGaUGAGCGU---GGCaCCGGCGCGc -3' miRNA: 3'- -UAGUaGCUUGCAuagCCG-GGCUGCGC- -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 27025 | 0.67 | 0.65209 |
Target: 5'- -gCAUCGGuCGUccggcaucuucGcCGGCCCGcACGCGg -3' miRNA: 3'- uaGUAGCUuGCA-----------UaGCCGGGC-UGCGC- -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 10850 | 0.67 | 0.650969 |
Target: 5'- gGUgGUCGAgcaggcccuGCGUggcuucgGUCGGCgCGAUGCGc -3' miRNA: 3'- -UAgUAGCU---------UGCA-------UAGCCGgGCUGCGC- -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 38677 | 0.67 | 0.640876 |
Target: 5'- -aCGUCcAGCGg--CGGCaCCGACGUGc -3' miRNA: 3'- uaGUAGcUUGCauaGCCG-GGCUGCGC- -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 11075 | 0.67 | 0.640876 |
Target: 5'- ---cUCGAACGUGUcCGGgUCGcGCGCGa -3' miRNA: 3'- uaguAGCUUGCAUA-GCCgGGC-UGCGC- -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 5281 | 0.67 | 0.640876 |
Target: 5'- gAUguUCGcGGCGuUGUCGGCCaCGGCGuCGa -3' miRNA: 3'- -UAguAGC-UUGC-AUAGCCGG-GCUGC-GC- -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 18130 | 0.67 | 0.629654 |
Target: 5'- -aCGUCGAACuUGUC-GCCCGGCucGCGc -3' miRNA: 3'- uaGUAGCUUGcAUAGcCGGGCUG--CGC- -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 6995 | 0.68 | 0.596041 |
Target: 5'- uUCAcacgcgCGAGCGgGUCGGCUCG-CGUGa -3' miRNA: 3'- uAGUa-----GCUUGCaUAGCCGGGCuGCGC- -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 7153 | 0.68 | 0.596041 |
Target: 5'- cUCAU--GACGUugaagcccaGGCCCGACGCGc -3' miRNA: 3'- uAGUAgcUUGCAuag------CCGGGCUGCGC- -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 29079 | 0.68 | 0.573776 |
Target: 5'- gGUCAuccUCGGGCGccgagGUCaGGCCCG-UGCGg -3' miRNA: 3'- -UAGU---AGCUUGCa----UAG-CCGGGCuGCGC- -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 41872 | 0.68 | 0.562713 |
Target: 5'- cAUgGUCGAgGCGUGguuuuucagCGGCCCG-CGCa -3' miRNA: 3'- -UAgUAGCU-UGCAUa--------GCCGGGCuGCGc -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 26748 | 0.68 | 0.562713 |
Target: 5'- uUCGUCGAuag---CGGCCUGACGUa -3' miRNA: 3'- uAGUAGCUugcauaGCCGGGCUGCGc -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 2728 | 0.69 | 0.540771 |
Target: 5'- ----cCGGACGcuugagcgCGGCCCGGCGCu -3' miRNA: 3'- uaguaGCUUGCaua-----GCCGGGCUGCGc -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 35695 | 0.69 | 0.540771 |
Target: 5'- -cUAUUGAGCGcggCGGCCCaGCGCa -3' miRNA: 3'- uaGUAGCUUGCauaGCCGGGcUGCGc -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 15258 | 0.69 | 0.539681 |
Target: 5'- gGUCGUCGAggcauccGCGUG-CGGCgCGugGgGg -3' miRNA: 3'- -UAGUAGCU-------UGCAUaGCCGgGCugCgC- -5' |
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26619 | 3' | -54.4 | NC_005357.1 | + | 11242 | 0.69 | 0.508427 |
Target: 5'- cGUCAggcaGAACGUGcgCGGCCCG-UGCu -3' miRNA: 3'- -UAGUag--CUUGCAUa-GCCGGGCuGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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