miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26620 3' -57.8 NC_005357.1 + 12239 0.66 0.47977
Target:  5'- cCGGCaacaGCgGCaUCGaacgGAUCGGCGGUAGu -3'
miRNA:   3'- -GCCGg---CGaCG-AGUa---CUAGCUGCCGUU- -5'
26620 3' -57.8 NC_005357.1 + 7543 0.66 0.47977
Target:  5'- uCGGCgGCgUGCUC--GAUCcGCGGCGc -3'
miRNA:   3'- -GCCGgCG-ACGAGuaCUAGcUGCCGUu -5'
26620 3' -57.8 NC_005357.1 + 22227 0.66 0.459354
Target:  5'- gCGGgCGCUGC-CAaGAcCGAgGGCGAc -3'
miRNA:   3'- -GCCgGCGACGaGUaCUaGCUgCCGUU- -5'
26620 3' -57.8 NC_005357.1 + 9736 0.66 0.44932
Target:  5'- gCGGgCGaaCUGCUCGUGGUgGGCGcGCu- -3'
miRNA:   3'- -GCCgGC--GACGAGUACUAgCUGC-CGuu -5'
26620 3' -57.8 NC_005357.1 + 39435 0.66 0.44932
Target:  5'- -cGCUGCUGCgcuau-UCGGCGGCAAc -3'
miRNA:   3'- gcCGGCGACGaguacuAGCUGCCGUU- -5'
26620 3' -57.8 NC_005357.1 + 41266 0.66 0.439409
Target:  5'- aCGGCUGUccUUCAccAUCGACGGCGAg -3'
miRNA:   3'- -GCCGGCGacGAGUacUAGCUGCCGUU- -5'
26620 3' -57.8 NC_005357.1 + 14942 0.66 0.439409
Target:  5'- aGGCCGCcgGCauccucgCGUGGUgcgUGGCGGCGc -3'
miRNA:   3'- gCCGGCGa-CGa------GUACUA---GCUGCCGUu -5'
26620 3' -57.8 NC_005357.1 + 31084 0.66 0.438425
Target:  5'- gGuGCCGCUGCUCAcc-UCGGugcaggcCGGCGAg -3'
miRNA:   3'- gC-CGGCGACGAGUacuAGCU-------GCCGUU- -5'
26620 3' -57.8 NC_005357.1 + 1329 0.67 0.430596
Target:  5'- aGGCCGacaagcgcgaggaaGC-CGUGGUCGGCGGCc- -3'
miRNA:   3'- gCCGGCga------------CGaGUACUAGCUGCCGuu -5'
26620 3' -57.8 NC_005357.1 + 32928 0.67 0.429624
Target:  5'- aCGGCUGCUGUUCGgccaGggCGAccaCGGCu- -3'
miRNA:   3'- -GCCGGCGACGAGUa---CuaGCU---GCCGuu -5'
26620 3' -57.8 NC_005357.1 + 4872 0.67 0.429624
Target:  5'- aGGUCGUUGCcCAgcgcggCGACGGCGg -3'
miRNA:   3'- gCCGGCGACGaGUacua--GCUGCCGUu -5'
26620 3' -57.8 NC_005357.1 + 10501 0.67 0.410444
Target:  5'- gGGCCG-UGCUCuUGAUCGAacugcugaccgcCGGCc- -3'
miRNA:   3'- gCCGGCgACGAGuACUAGCU------------GCCGuu -5'
26620 3' -57.8 NC_005357.1 + 16898 0.67 0.401056
Target:  5'- gGGgCGCUGC-CGg---CGGCGGCAAa -3'
miRNA:   3'- gCCgGCGACGaGUacuaGCUGCCGUU- -5'
26620 3' -57.8 NC_005357.1 + 31187 0.67 0.401056
Target:  5'- gGGCCGCgcacGUUCugccugacGGUCGAgGGCGAa -3'
miRNA:   3'- gCCGGCGa---CGAGua------CUAGCUgCCGUU- -5'
26620 3' -57.8 NC_005357.1 + 30564 0.67 0.391806
Target:  5'- cCGGCCGCUGUagaugCGgcaGAUgGugGGCu- -3'
miRNA:   3'- -GCCGGCGACGa----GUa--CUAgCugCCGuu -5'
26620 3' -57.8 NC_005357.1 + 2556 0.67 0.391806
Target:  5'- gGGCCGC-GCUCGUaAUUGcCGGCu- -3'
miRNA:   3'- gCCGGCGaCGAGUAcUAGCuGCCGuu -5'
26620 3' -57.8 NC_005357.1 + 42050 0.67 0.382696
Target:  5'- uGGCCGC-GCUCA--AUCGGCaGGCc- -3'
miRNA:   3'- gCCGGCGaCGAGUacUAGCUG-CCGuu -5'
26620 3' -57.8 NC_005357.1 + 35962 0.68 0.373728
Target:  5'- gCGGCgUGCaGUUCcUGcgCGACGGCGAc -3'
miRNA:   3'- -GCCG-GCGaCGAGuACuaGCUGCCGUU- -5'
26620 3' -57.8 NC_005357.1 + 31371 0.68 0.373728
Target:  5'- aCGGCCggaaGCUGCUCAaggcguUGAacccCGACuGGCAAc -3'
miRNA:   3'- -GCCGG----CGACGAGU------ACUa---GCUG-CCGUU- -5'
26620 3' -57.8 NC_005357.1 + 25004 0.68 0.34769
Target:  5'- gGGCCaCUGCUCAaGGgcgaCGugGGCGc -3'
miRNA:   3'- gCCGGcGACGAGUaCUa---GCugCCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.