Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26620 | 3' | -57.8 | NC_005357.1 | + | 13014 | 0.69 | 0.331065 |
Target: 5'- aGGCCGCgcaGCgcaGUGG-CGACGGCc- -3' miRNA: 3'- gCCGGCGa--CGag-UACUaGCUGCCGuu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 34378 | 0.69 | 0.30724 |
Target: 5'- uGGgCGC-GCgUCAUGGaCGGCGGCAAg -3' miRNA: 3'- gCCgGCGaCG-AGUACUaGCUGCCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 18572 | 0.69 | 0.30724 |
Target: 5'- aGGCCGC-GCUCGcGGU-GACGGCc- -3' miRNA: 3'- gCCGGCGaCGAGUaCUAgCUGCCGuu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 29763 | 0.69 | 0.292097 |
Target: 5'- uCGGCUGCUGCcaggcgCGUGcgCGAgauuuCGGCAu -3' miRNA: 3'- -GCCGGCGACGa-----GUACuaGCU-----GCCGUu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 19501 | 0.7 | 0.270488 |
Target: 5'- aGGCCGCUGCgaacCGUGGUCuugugcuCGGUGAa -3' miRNA: 3'- gCCGGCGACGa---GUACUAGcu-----GCCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 13622 | 0.7 | 0.263576 |
Target: 5'- aCGGCgcgcugGCUGCUCAaGAUCGGCaaccagGGCAAg -3' miRNA: 3'- -GCCGg-----CGACGAGUaCUAGCUG------CCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 1146 | 0.7 | 0.256809 |
Target: 5'- gCGGCCGUUugcGCUCGccGUCGAUGGUGAa -3' miRNA: 3'- -GCCGGCGA---CGAGUacUAGCUGCCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 4354 | 0.71 | 0.223891 |
Target: 5'- uGGCCGUUGCguugccggugcgCGUGAaggCGACGGCc- -3' miRNA: 3'- gCCGGCGACGa-----------GUACUa--GCUGCCGuu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 25759 | 0.71 | 0.21336 |
Target: 5'- gGGCgCGCUGCUgGg---CGGCGGCAAc -3' miRNA: 3'- gCCG-GCGACGAgUacuaGCUGCCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 18795 | 0.73 | 0.16691 |
Target: 5'- aGGCCGCcaccuUGUUgGUGAUCuGGCGGCGc -3' miRNA: 3'- gCCGGCG-----ACGAgUACUAG-CUGCCGUu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 8628 | 0.74 | 0.153562 |
Target: 5'- uCGGCCGCUGCgguggCGaGGUCGcCGGCc- -3' miRNA: 3'- -GCCGGCGACGa----GUaCUAGCuGCCGuu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 16148 | 0.74 | 0.141189 |
Target: 5'- gCGGCCGCacGCUgAUGGUgGugGGCGu -3' miRNA: 3'- -GCCGGCGa-CGAgUACUAgCugCCGUu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 35108 | 0.75 | 0.115797 |
Target: 5'- cCGGCUGCUGCguucgCAgaccAUCGACGGCGc -3' miRNA: 3'- -GCCGGCGACGa----GUac--UAGCUGCCGUu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 25164 | 0.76 | 0.10034 |
Target: 5'- cCGGCC-CUcGCUCGUGGUCGGCGGg-- -3' miRNA: 3'- -GCCGGcGA-CGAGUACUAGCUGCCguu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 13473 | 0.76 | 0.094719 |
Target: 5'- uCGGCauguCGCUGCaUCAUGAguUCGAUGGCAGc -3' miRNA: 3'- -GCCG----GCGACG-AGUACU--AGCUGCCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 41299 | 1.07 | 0.000506 |
Target: 5'- aCGGCCGCUGCUCAUGAUCGACGGCAAg -3' miRNA: 3'- -GCCGGCGACGAGUACUAGCUGCCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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