miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26620 5' -53.9 NC_005357.1 + 35064 0.67 0.645399
Target:  5'- cGCCGCuggacgaacgaCGCCGAgGUcGAGgcCGCGCu -3'
miRNA:   3'- aUGGCG-----------GCGGUUgUAcUUCauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 16359 0.67 0.656776
Target:  5'- -cCCGCCccgaguucGCCGagcGCAUGGA--GCGCGCc -3'
miRNA:   3'- auGGCGG--------CGGU---UGUACUUcaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 1057 0.67 0.611233
Target:  5'- -gUCGCCGCgAACcgGcguccAGUaACGCGCg -3'
miRNA:   3'- auGGCGGCGgUUGuaCu----UCA-UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 42117 0.67 0.611233
Target:  5'- gUACgGCaCGCCcugGACG-GAAGaGCGCGCc -3'
miRNA:   3'- -AUGgCG-GCGG---UUGUaCUUCaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18548 0.67 0.621477
Target:  5'- gGCCGaaGUCGAUcacgucgGUGGAGgcCGCGCu -3'
miRNA:   3'- aUGGCggCGGUUG-------UACUUCauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 16615 0.67 0.622616
Target:  5'- uUGgCGCCGCCGuugGUGAAgagguuGUugGUGCa -3'
miRNA:   3'- -AUgGCGGCGGUug-UACUU------CAugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 23460 0.67 0.634008
Target:  5'- cGCgCGUacaCGCCGGCGUGGaacaGGUGCGcCGUg -3'
miRNA:   3'- aUG-GCG---GCGGUUGUACU----UCAUGC-GCG- -5'
26620 5' -53.9 NC_005357.1 + 24902 0.67 0.634008
Target:  5'- --aCGCgCGCCGGaAUGAAcGUGCGCGa -3'
miRNA:   3'- augGCG-GCGGUUgUACUU-CAUGCGCg -5'
26620 5' -53.9 NC_005357.1 + 30138 0.67 0.634008
Target:  5'- cGCCGCCgGCCugcaccgcgucgGACAUcagcGGcAGUugGCGCc -3'
miRNA:   3'- aUGGCGG-CGG------------UUGUA----CU-UCAugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 36327 0.67 0.634008
Target:  5'- cACCGuuG-CGACAUGcgcAAGgcCGCGCu -3'
miRNA:   3'- aUGGCggCgGUUGUAC---UUCauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 4265 0.67 0.634008
Target:  5'- gGCCGUcagCGCCGGCAUGGugauGgcCGUGUc -3'
miRNA:   3'- aUGGCG---GCGGUUGUACUu---CauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 8630 0.67 0.640844
Target:  5'- gGCCGCUGCgGugGcGAGGUcgccggccuucauCGCGCg -3'
miRNA:   3'- aUGGCGGCGgUugUaCUUCAu------------GCGCG- -5'
26620 5' -53.9 NC_005357.1 + 37004 0.67 0.634008
Target:  5'- --aCGCCGCCAuccgcgcCGUGGAgcGUACGCa- -3'
miRNA:   3'- augGCGGCGGUu------GUACUU--CAUGCGcg -5'
26620 5' -53.9 NC_005357.1 + 27854 0.67 0.634008
Target:  5'- cGCCGCUGCUcaagAACGUGuc---CGCGCu -3'
miRNA:   3'- aUGGCGGCGG----UUGUACuucauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 35361 0.67 0.656776
Target:  5'- gGCCGCgGCgu-CAUGAAGUACcuggcCGCc -3'
miRNA:   3'- aUGGCGgCGguuGUACUUCAUGc----GCG- -5'
26620 5' -53.9 NC_005357.1 + 29571 0.68 0.599869
Target:  5'- cUACaacaaGCUGaCCAACAgcccgGAcgAGUugGCGCg -3'
miRNA:   3'- -AUGg----CGGC-GGUUGUa----CU--UCAugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 19049 0.68 0.599869
Target:  5'- gGCCGCCGgCGGCGUcGAucaGCGUGUc -3'
miRNA:   3'- aUGGCGGCgGUUGUA-CUucaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 38190 0.68 0.599869
Target:  5'- cACCGacuaCGCCAucuacgucugcgACgAUGGcacGGUGCGCGCc -3'
miRNA:   3'- aUGGCg---GCGGU------------UG-UACU---UCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 17782 0.68 0.599869
Target:  5'- -gUCGCgCGCgAACGgauaGAAGcGCGCGCa -3'
miRNA:   3'- auGGCG-GCGgUUGUa---CUUCaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18515 0.68 0.577239
Target:  5'- cGCCuaUGCCGGCAUgGAAGccGCGgGCg -3'
miRNA:   3'- aUGGcgGCGGUUGUA-CUUCa-UGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.