miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26620 5' -53.9 NC_005357.1 + 41396 0.69 0.5097
Target:  5'- aUGCUGCCGCCGGcCGUGGccuuccaGGUguucgACGCuGCg -3'
miRNA:   3'- -AUGGCGGCGGUU-GUACU-------UCA-----UGCG-CG- -5'
26620 5' -53.9 NC_005357.1 + 8293 0.69 0.499999
Target:  5'- cGCUGCCggggcagugcaGCCAGC----GGUGCGCGCu -3'
miRNA:   3'- aUGGCGG-----------CGGUUGuacuUCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 33099 0.72 0.370869
Target:  5'- aUGCCGCCGCCcgccGCGccGAcGUGCGcCGCc -3'
miRNA:   3'- -AUGGCGGCGGu---UGUa-CUuCAUGC-GCG- -5'
26620 5' -53.9 NC_005357.1 + 31332 0.74 0.259461
Target:  5'- gGCCGCaGCCGACA--AGGUgcucGCGCGCg -3'
miRNA:   3'- aUGGCGgCGGUUGUacUUCA----UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 13112 0.68 0.588534
Target:  5'- gACCGCCaCCGcCuUGAAGUGCuGgGCa -3'
miRNA:   3'- aUGGCGGcGGUuGuACUUCAUG-CgCG- -5'
26620 5' -53.9 NC_005357.1 + 33662 0.68 0.565992
Target:  5'- cGCCGCgUGCUGcccgaagcggcACGUGAA-UACGCGCg -3'
miRNA:   3'- aUGGCG-GCGGU-----------UGUACUUcAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 41284 0.7 0.472454
Target:  5'- gACCGCCGCCGuaGCGcGAgcuaacgguuacaccGGgccgAUGCGCg -3'
miRNA:   3'- aUGGCGGCGGU--UGUaCU---------------UCa---UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 14385 0.75 0.239459
Target:  5'- gACCGUCGCCGACGUGuucuucgGCGaCGCc -3'
miRNA:   3'- aUGGCGGCGGUUGUACuuca---UGC-GCG- -5'
26620 5' -53.9 NC_005357.1 + 13853 0.68 0.565992
Target:  5'- --aCGCUGCCggUGgccGAcGUGCGCGCc -3'
miRNA:   3'- augGCGGCGGuuGUa--CUuCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 8751 0.75 0.239459
Target:  5'- cGCUaCCGUCAACAUGGAauuUGCGCGCg -3'
miRNA:   3'- aUGGcGGCGGUUGUACUUc--AUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 13774 0.7 0.478744
Target:  5'- gGCCGCCGgcaCCGAUcUGGcacUGCGCGCg -3'
miRNA:   3'- aUGGCGGC---GGUUGuACUuc-AUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 1590 0.69 0.510783
Target:  5'- gGCCGCCGCCuuCcugGUGGucgAGUGCGUugguuuGCg -3'
miRNA:   3'- aUGGCGGCGGuuG---UACU---UCAUGCG------CG- -5'
26620 5' -53.9 NC_005357.1 + 34758 0.71 0.408168
Target:  5'- gAUCGCCGCCAAa--GAAcgGCGCGUg -3'
miRNA:   3'- aUGGCGGCGGUUguaCUUcaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 34251 0.71 0.398625
Target:  5'- aAUCGCCGgCAGCAUccGGgcgcACGCGCa -3'
miRNA:   3'- aUGGCGGCgGUUGUAcuUCa---UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 16671 0.72 0.344462
Target:  5'- uUGCCGCCGcCCAGCA------GCGCGCc -3'
miRNA:   3'- -AUGGCGGC-GGUUGUacuucaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 20004 0.73 0.311399
Target:  5'- cGCCGCCGUCAagGCGUGGcuGGcgaacgucACGCGCu -3'
miRNA:   3'- aUGGCGGCGGU--UGUACU--UCa-------UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 29571 0.68 0.599869
Target:  5'- cUACaacaaGCUGaCCAACAgcccgGAcgAGUugGCGCg -3'
miRNA:   3'- -AUGg----CGGC-GGUUGUa----CU--UCAugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 14299 0.68 0.588534
Target:  5'- cUGCUGCCGcCCGACcaGgcGUAcCGCGUg -3'
miRNA:   3'- -AUGGCGGC-GGUUGuaCuuCAU-GCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18515 0.68 0.577239
Target:  5'- cGCCuaUGCCGGCAUgGAAGccGCGgGCg -3'
miRNA:   3'- aUGGcgGCGGUUGUA-CUUCa-UGCgCG- -5'
26620 5' -53.9 NC_005357.1 + 1157 0.68 0.574986
Target:  5'- cGCuCGCCGUCgAugGUGAAGgacagccguauCGCGCu -3'
miRNA:   3'- aUG-GCGGCGG-UugUACUUCau---------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.