miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26620 5' -53.9 NC_005357.1 + 28280 0.68 0.565992
Target:  5'- gACCGCgCGCUggGACAcggcgcagaacuUGAAGaacucgGCGCGCu -3'
miRNA:   3'- aUGGCG-GCGG--UUGU------------ACUUCa-----UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 23357 0.69 0.542571
Target:  5'- -cUCGCCGCCGAUgaacacgGUGgcGUGCcCGCu -3'
miRNA:   3'- auGGCGGCGGUUG-------UACuuCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 13060 0.69 0.54368
Target:  5'- gUGCgGCCGUCuGCAUGuuGaaUugGCGCu -3'
miRNA:   3'- -AUGgCGGCGGuUGUACuuC--AugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 17444 0.69 0.54368
Target:  5'- gGCC-CCGCCAGCAUcGAGGccAgGUGCc -3'
miRNA:   3'- aUGGcGGCGGUUGUA-CUUCa-UgCGCG- -5'
26620 5' -53.9 NC_005357.1 + 35887 0.69 0.54368
Target:  5'- gGCUGCuacgucaaCGCCAGCAUcGAAcuGUGgGCGCa -3'
miRNA:   3'- aUGGCG--------GCGGUUGUA-CUU--CAUgCGCG- -5'
26620 5' -53.9 NC_005357.1 + 38691 0.69 0.54368
Target:  5'- gUGCCGCCcucaucaaauccGCgAGCAUGAGcggAUGCGCc -3'
miRNA:   3'- -AUGGCGG------------CGgUUGUACUUca-UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 38809 0.68 0.554803
Target:  5'- uUACCaCCGCCAGC--GAAGcaaaAUGCGCg -3'
miRNA:   3'- -AUGGcGGCGGUUGuaCUUCa---UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 12993 0.68 0.554803
Target:  5'- aACCGcCCGCCGuucuCGUacAGgcCGCGCa -3'
miRNA:   3'- aUGGC-GGCGGUu---GUAcuUCauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 25534 0.68 0.565992
Target:  5'- uUGCCGCCGCCGGCA--------GCGCc -3'
miRNA:   3'- -AUGGCGGCGGUUGUacuucaugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 23561 0.69 0.510783
Target:  5'- gGCCGacauCGCCGGCA---GGUGCGgGCg -3'
miRNA:   3'- aUGGCg---GCGGUUGUacuUCAUGCgCG- -5'
26620 5' -53.9 NC_005357.1 + 15765 0.7 0.457943
Target:  5'- cGuuGCCGCCAAU----GGUGCGaCGCa -3'
miRNA:   3'- aUggCGGCGGUUGuacuUCAUGC-GCG- -5'
26620 5' -53.9 NC_005357.1 + 17203 0.7 0.447725
Target:  5'- cGCCGCCGCCGAa--GGAGcguugcaggACGCGg -3'
miRNA:   3'- aUGGCGGCGGUUguaCUUCa--------UGCGCg -5'
26620 5' -53.9 NC_005357.1 + 22332 0.76 0.214812
Target:  5'- gUGCCGaacgCGCCGaguucuucguACAUGGAGUGCaGCGCg -3'
miRNA:   3'- -AUGGCg---GCGGU----------UGUACUUCAUG-CGCG- -5'
26620 5' -53.9 NC_005357.1 + 6626 0.74 0.271389
Target:  5'- -uCCGCCGCCAGCuucgcgcgcuuggccGGAGUGucCGCGCu -3'
miRNA:   3'- auGGCGGCGGUUGua-------------CUUCAU--GCGCG- -5'
26620 5' -53.9 NC_005357.1 + 28554 0.72 0.367269
Target:  5'- uUGCgGCCGCCGGCcaucgcgGCGCGCa -3'
miRNA:   3'- -AUGgCGGCGGUUGuacuucaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 22833 0.71 0.379973
Target:  5'- cGCCGCgcUGCCGACAgccGAcAGcGCGCGCu -3'
miRNA:   3'- aUGGCG--GCGGUUGUa--CU-UCaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 8049 0.71 0.398625
Target:  5'- uUGCCGCCGUC--CAUGAc--GCGCGCc -3'
miRNA:   3'- -AUGGCGGCGGuuGUACUucaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 21935 0.71 0.408168
Target:  5'- cACCGCCGaccaaggcCCAACggGGcacAGUGCGCGg -3'
miRNA:   3'- aUGGCGGC--------GGUUGuaCU---UCAUGCGCg -5'
26620 5' -53.9 NC_005357.1 + 33770 0.71 0.417852
Target:  5'- aGCCGCUGCacACAgcGAGUACgGCGCg -3'
miRNA:   3'- aUGGCGGCGguUGUacUUCAUG-CGCG- -5'
26620 5' -53.9 NC_005357.1 + 27718 0.7 0.447725
Target:  5'- gGCuCGCCGCCggUcauggacuugAUGAGGcccuCGCGCa -3'
miRNA:   3'- aUG-GCGGCGGuuG----------UACUUCau--GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.