miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26620 5' -53.9 NC_005357.1 + 803 0.73 0.319434
Target:  5'- aAUCGCCGUCAGCAggUGGcugggcuugAGcGCGCGCa -3'
miRNA:   3'- aUGGCGGCGGUUGU--ACU---------UCaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 893 0.67 0.656776
Target:  5'- gGCCGCCGCguuguucCA-GAAGUugacCGCGCu -3'
miRNA:   3'- aUGGCGGCGguu----GUaCUUCAu---GCGCG- -5'
26620 5' -53.9 NC_005357.1 + 1057 0.67 0.611233
Target:  5'- -gUCGCCGCgAACcgGcguccAGUaACGCGCg -3'
miRNA:   3'- auGGCGGCGgUUGuaCu----UCA-UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 1157 0.68 0.574986
Target:  5'- cGCuCGCCGUCgAugGUGAAGgacagccguauCGCGCu -3'
miRNA:   3'- aUG-GCGGCGG-UugUACUUCau---------GCGCG- -5'
26620 5' -53.9 NC_005357.1 + 1590 0.69 0.510783
Target:  5'- gGCCGCCGCCuuCcugGUGGucgAGUGCGUugguuuGCg -3'
miRNA:   3'- aUGGCGGCGGuuG---UACU---UCAUGCG------CG- -5'
26620 5' -53.9 NC_005357.1 + 3897 0.66 0.679446
Target:  5'- -gUCGCCGCCGAacuUGGuagauuucuucGGggACGCGCu -3'
miRNA:   3'- auGGCGGCGGUUgu-ACU-----------UCa-UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 4172 0.67 0.634008
Target:  5'- cGCCGUgGUCGAgGUGuagccAGUGgGCGCc -3'
miRNA:   3'- aUGGCGgCGGUUgUACu----UCAUgCGCG- -5'
26620 5' -53.9 NC_005357.1 + 4265 0.67 0.634008
Target:  5'- gGCCGUcagCGCCGGCAUGGugauGgcCGUGUc -3'
miRNA:   3'- aUGGCG---GCGGUUGUACUu---CauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 5357 0.68 0.588534
Target:  5'- uUGgCGacaGCCAACAUGcucgacAGGUGCGUGCu -3'
miRNA:   3'- -AUgGCgg-CGGUUGUAC------UUCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 5363 0.67 0.634008
Target:  5'- gGCCGCCugcaccgcGCCcaggguUAUGucacuGGUGCGCGCc -3'
miRNA:   3'- aUGGCGG--------CGGuu----GUACu----UCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 5467 0.67 0.649952
Target:  5'- -cCCGCCgggcggcgagguguuGCCGAUggGggGUACG-GCg -3'
miRNA:   3'- auGGCGG---------------CGGUUGuaCuuCAUGCgCG- -5'
26620 5' -53.9 NC_005357.1 + 5890 0.66 0.679446
Target:  5'- gGCauagGUCGCCAGCGUGGugaguGUGC-CGCc -3'
miRNA:   3'- aUGg---CGGCGGUUGUACUu----CAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 6415 0.66 0.701923
Target:  5'- -gUCGCgGCC--CAUGucGUugGCGCc -3'
miRNA:   3'- auGGCGgCGGuuGUACuuCAugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 6626 0.74 0.271389
Target:  5'- -uCCGCCGCCAGCuucgcgcgcuuggccGGAGUGucCGCGCu -3'
miRNA:   3'- auGGCGGCGGUUGua-------------CUUCAU--GCGCG- -5'
26620 5' -53.9 NC_005357.1 + 8049 0.71 0.398625
Target:  5'- uUGCCGCCGUC--CAUGAc--GCGCGCc -3'
miRNA:   3'- -AUGGCGGCGGuuGUACUucaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 8055 0.66 0.724109
Target:  5'- aACCGCUGCuCGACcaucAGUucaccgcccaagGCGCGCa -3'
miRNA:   3'- aUGGCGGCG-GUUGuacuUCA------------UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 8120 0.66 0.713059
Target:  5'- cACCGCgCgGCCGGCGUu-GGUuguggGCGUGCg -3'
miRNA:   3'- aUGGCG-G-CGGUUGUAcuUCA-----UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 8293 0.69 0.499999
Target:  5'- cGCUGCCggggcagugcaGCCAGC----GGUGCGCGCu -3'
miRNA:   3'- aUGGCGG-----------CGGUUGuacuUCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 8395 0.66 0.66813
Target:  5'- aAUCGCCGCCcACGUGucGggcaGCGaGCa -3'
miRNA:   3'- aUGGCGGCGGuUGUACuuCa---UGCgCG- -5'
26620 5' -53.9 NC_005357.1 + 8630 0.67 0.640844
Target:  5'- gGCCGCUGCgGugGcGAGGUcgccggccuucauCGCGCg -3'
miRNA:   3'- aUGGCGGCGgUugUaCUUCAu------------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.