Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 42117 | 0.67 | 0.611233 |
Target: 5'- gUACgGCaCGCCcugGACG-GAAGaGCGCGCc -3' miRNA: 3'- -AUGgCG-GCGG---UUGUaCUUCaUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 41396 | 0.69 | 0.5097 |
Target: 5'- aUGCUGCCGCCGGcCGUGGccuuccaGGUguucgACGCuGCg -3' miRNA: 3'- -AUGGCGGCGGUU-GUACU-------UCA-----UGCG-CG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 41337 | 1.11 | 0.000673 |
Target: 5'- cUACCGCCGCCAACAUGAAGUACGCGCg -3' miRNA: 3'- -AUGGCGGCGGUUGUACUUCAUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 41284 | 0.7 | 0.472454 |
Target: 5'- gACCGCCGCCGuaGCGcGAgcuaacgguuacaccGGgccgAUGCGCg -3' miRNA: 3'- aUGGCGGCGGU--UGUaCU---------------UCa---UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 40277 | 0.66 | 0.713059 |
Target: 5'- --aUGCCGCCAGCAaGAccauaaAGUGCcUGCa -3' miRNA: 3'- augGCGGCGGUUGUaCU------UCAUGcGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 40271 | 0.68 | 0.577239 |
Target: 5'- aACUGuUCGCCAACGUGuacgGCgGCGCg -3' miRNA: 3'- aUGGC-GGCGGUUGUACuucaUG-CGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 40035 | 0.66 | 0.713059 |
Target: 5'- uUGCCGCC-CUGACAa-GGGUACGCacGCg -3' miRNA: 3'- -AUGGCGGcGGUUGUacUUCAUGCG--CG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 38809 | 0.68 | 0.554803 |
Target: 5'- uUACCaCCGCCAGC--GAAGcaaaAUGCGCg -3' miRNA: 3'- -AUGGcGGCGGUUGuaCUUCa---UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 38691 | 0.69 | 0.54368 |
Target: 5'- gUGCCGCCcucaucaaauccGCgAGCAUGAGcggAUGCGCc -3' miRNA: 3'- -AUGGCGG------------CGgUUGUACUUca-UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 38399 | 0.66 | 0.701923 |
Target: 5'- cGCCGCgGCCGGCuuUGAAGccuauCGCu- -3' miRNA: 3'- aUGGCGgCGGUUGu-ACUUCau---GCGcg -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 38190 | 0.68 | 0.599869 |
Target: 5'- cACCGacuaCGCCAucuacgucugcgACgAUGGcacGGUGCGCGCc -3' miRNA: 3'- aUGGCg---GCGGU------------UG-UACU---UCAUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 37638 | 0.66 | 0.724109 |
Target: 5'- cAgCGCCaGCCGGCGUGc--UGgGCGCa -3' miRNA: 3'- aUgGCGG-CGGUUGUACuucAUgCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 37004 | 0.67 | 0.634008 |
Target: 5'- --aCGCCGCCAuccgcgcCGUGGAgcGUACGCa- -3' miRNA: 3'- augGCGGCGGUu------GUACUU--CAUGCGcg -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 36899 | 0.68 | 0.593064 |
Target: 5'- gACCagaaGCUGCCGGCcUGGaacuaccaggcaccgAGUugGCGCu -3' miRNA: 3'- aUGG----CGGCGGUUGuACU---------------UCAugCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 36833 | 0.68 | 0.577239 |
Target: 5'- cACC-CCGCCGAgugggccaaauuCGUGGAGUAUGCcgGCc -3' miRNA: 3'- aUGGcGGCGGUU------------GUACUUCAUGCG--CG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 36327 | 0.67 | 0.634008 |
Target: 5'- cACCGuuG-CGACAUGcgcAAGgcCGCGCu -3' miRNA: 3'- aUGGCggCgGUUGUAC---UUCauGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 35887 | 0.69 | 0.54368 |
Target: 5'- gGCUGCuacgucaaCGCCAGCAUcGAAcuGUGgGCGCa -3' miRNA: 3'- aUGGCG--------GCGGUUGUA-CUU--CAUgCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 35361 | 0.67 | 0.656776 |
Target: 5'- gGCCGCgGCgu-CAUGAAGUACcuggcCGCc -3' miRNA: 3'- aUGGCGgCGguuGUACUUCAUGc----GCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 35064 | 0.67 | 0.645399 |
Target: 5'- cGCCGCuggacgaacgaCGCCGAgGUcGAGgcCGCGCu -3' miRNA: 3'- aUGGCG-----------GCGGUUgUAcUUCauGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 34845 | 0.66 | 0.666996 |
Target: 5'- cACCGUCGCCGACgacuucGUGGAcGUguccaagccggugGCGcCGCg -3' miRNA: 3'- aUGGCGGCGGUUG------UACUU-CA-------------UGC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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