Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 5890 | 0.66 | 0.679446 |
Target: 5'- gGCauagGUCGCCAGCGUGGugaguGUGC-CGCc -3' miRNA: 3'- aUGg---CGGCGGUUGUACUu----CAUGcGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 3897 | 0.66 | 0.679446 |
Target: 5'- -gUCGCCGCCGAacuUGGuagauuucuucGGggACGCGCu -3' miRNA: 3'- auGGCGGCGGUUgu-ACU-----------UCa-UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 34687 | 0.66 | 0.672661 |
Target: 5'- -uUCGUCGCCAACAgcaagccggccgccGAGcGUGCGCuGCa -3' miRNA: 3'- auGGCGGCGGUUGUa-------------CUU-CAUGCG-CG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 30429 | 0.66 | 0.66813 |
Target: 5'- cGCUGCUgGCCGACGUGGaaaAGgccaagauUGCGCa -3' miRNA: 3'- aUGGCGG-CGGUUGUACU---UCau------GCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 18964 | 0.66 | 0.66813 |
Target: 5'- cACCuGUuccaCGCCGGCGU---GUACGCGCg -3' miRNA: 3'- aUGG-CG----GCGGUUGUAcuuCAUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 8395 | 0.66 | 0.66813 |
Target: 5'- aAUCGCCGCCcACGUGucGggcaGCGaGCa -3' miRNA: 3'- aUGGCGGCGGuUGUACuuCa---UGCgCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 34845 | 0.66 | 0.666996 |
Target: 5'- cACCGUCGCCGACgacuucGUGGAcGUguccaagccggugGCGcCGCg -3' miRNA: 3'- aUGGCGGCGGUUG------UACUU-CA-------------UGC-GCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 32448 | 0.67 | 0.661321 |
Target: 5'- gACUGCCccuacgcccccuacuGCCGAgGUGggGgcggccgAUGCGCc -3' miRNA: 3'- aUGGCGG---------------CGGUUgUACuuCa------UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 35361 | 0.67 | 0.656776 |
Target: 5'- gGCCGCgGCgu-CAUGAAGUACcuggcCGCc -3' miRNA: 3'- aUGGCGgCGguuGUACUUCAUGc----GCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 13764 | 0.67 | 0.656776 |
Target: 5'- -uCCaG-CGCCGACAUGAGcgcaaucuuGUGCGCGUu -3' miRNA: 3'- auGG-CgGCGGUUGUACUU---------CAUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 16359 | 0.67 | 0.656776 |
Target: 5'- -cCCGCCccgaguucGCCGagcGCAUGGA--GCGCGCc -3' miRNA: 3'- auGGCGG--------CGGU---UGUACUUcaUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 893 | 0.67 | 0.656776 |
Target: 5'- gGCCGCCGCguuguucCA-GAAGUugacCGCGCu -3' miRNA: 3'- aUGGCGGCGguu----GUaCUUCAu---GCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 5467 | 0.67 | 0.649952 |
Target: 5'- -cCCGCCgggcggcgagguguuGCCGAUggGggGUACG-GCg -3' miRNA: 3'- auGGCGG---------------CGGUUGuaCuuCAUGCgCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 35064 | 0.67 | 0.645399 |
Target: 5'- cGCCGCuggacgaacgaCGCCGAgGUcGAGgcCGCGCu -3' miRNA: 3'- aUGGCG-----------GCGGUUgUAcUUCauGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 33853 | 0.67 | 0.641983 |
Target: 5'- gGCCGCaCGCgCGGCcuacgacgcccaggAUGAGGUcgaGCGCg -3' miRNA: 3'- aUGGCG-GCG-GUUG--------------UACUUCAug-CGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 8630 | 0.67 | 0.640844 |
Target: 5'- gGCCGCUGCgGugGcGAGGUcgccggccuucauCGCGCg -3' miRNA: 3'- aUGGCGGCGgUugUaCUUCAu------------GCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 9204 | 0.67 | 0.634008 |
Target: 5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3' miRNA: 3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 5363 | 0.67 | 0.634008 |
Target: 5'- gGCCGCCugcaccgcGCCcaggguUAUGucacuGGUGCGCGCc -3' miRNA: 3'- aUGGCGG--------CGGuu----GUACu----UCAUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 9060 | 0.67 | 0.634008 |
Target: 5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3' miRNA: 3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 9012 | 0.67 | 0.634008 |
Target: 5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3' miRNA: 3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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