miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26621 3' -53.6 NC_005357.1 + 13535 0.66 0.726011
Target:  5'- ---cGCGCCGAAcuGUCggCCGCCUGACu -3'
miRNA:   3'- ucuuUGUGGUUUu-CGGg-GGCGGACUG- -5'
26621 3' -53.6 NC_005357.1 + 19710 0.66 0.726011
Target:  5'- uGGAAGCugCAuaGAGGCgccgcgcaucgCCCUGCUUGGg -3'
miRNA:   3'- -UCUUUGugGU--UUUCG-----------GGGGCGGACUg -5'
26621 3' -53.6 NC_005357.1 + 35044 0.66 0.726011
Target:  5'- uGGAAGguCGCCGc-GGUgCCCGCCgcugGACg -3'
miRNA:   3'- -UCUUU--GUGGUuuUCGgGGGCGGa---CUG- -5'
26621 3' -53.6 NC_005357.1 + 25377 0.66 0.726011
Target:  5'- gGGcAGGCGCCAGAAGCCCUuuUGCgaGu- -3'
miRNA:   3'- -UC-UUUGUGGUUUUCGGGG--GCGgaCug -5'
26621 3' -53.6 NC_005357.1 + 31179 0.66 0.714888
Target:  5'- uGAAGCAC---GGGCCgcgcacguUCUGCCUGACg -3'
miRNA:   3'- uCUUUGUGguuUUCGG--------GGGCGGACUG- -5'
26621 3' -53.6 NC_005357.1 + 24149 0.66 0.703677
Target:  5'- ---cGCGCCu--GGCCCagCGCCUcGACg -3'
miRNA:   3'- ucuuUGUGGuuuUCGGGg-GCGGA-CUG- -5'
26621 3' -53.6 NC_005357.1 + 14988 0.66 0.703677
Target:  5'- --cAGCGCC-AGGGCCUgcggCCGCCgGGCg -3'
miRNA:   3'- ucuUUGUGGuUUUCGGG----GGCGGaCUG- -5'
26621 3' -53.6 NC_005357.1 + 24381 0.66 0.692389
Target:  5'- ---cGCGCCGguAAGGCCCCCaagcagcccGCC-GACa -3'
miRNA:   3'- ucuuUGUGGU--UUUCGGGGG---------CGGaCUG- -5'
26621 3' -53.6 NC_005357.1 + 31376 0.66 0.681038
Target:  5'- cGGAAGCugCucAAGGCguugaaCCCCGaCUGGCa -3'
miRNA:   3'- -UCUUUGugGu-UUUCG------GGGGCgGACUG- -5'
26621 3' -53.6 NC_005357.1 + 3788 0.66 0.681038
Target:  5'- -----uGCCGAAAGCCagCGCCUGGa -3'
miRNA:   3'- ucuuugUGGUUUUCGGggGCGGACUg -5'
26621 3' -53.6 NC_005357.1 + 29100 0.66 0.669636
Target:  5'- cGGcGACcuGCCGAAAGCCUacgCCGCCU-ACa -3'
miRNA:   3'- -UCuUUG--UGGUUUUCGGG---GGCGGAcUG- -5'
26621 3' -53.6 NC_005357.1 + 35618 0.67 0.64673
Target:  5'- cGAAacccGCGCCGu--GUCCCUGgCUGACc -3'
miRNA:   3'- uCUU----UGUGGUuuuCGGGGGCgGACUG- -5'
26621 3' -53.6 NC_005357.1 + 30120 0.67 0.64673
Target:  5'- uGAGgccGCGCCAGAAcacGCCgCCgGCCUGcACc -3'
miRNA:   3'- uCUU---UGUGGUUUU---CGG-GGgCGGAC-UG- -5'
26621 3' -53.6 NC_005357.1 + 19474 0.67 0.635249
Target:  5'- cAGGAAUACCAGAAGCagaCCgaaGCCUa-- -3'
miRNA:   3'- -UCUUUGUGGUUUUCGg--GGg--CGGAcug -5'
26621 3' -53.6 NC_005357.1 + 16512 0.67 0.635249
Target:  5'- uGGGcCACCGcAAGCUgcaagucgaaaCCCGCCUGAa -3'
miRNA:   3'- uCUUuGUGGUuUUCGG-----------GGGCGGACUg -5'
26621 3' -53.6 NC_005357.1 + 23038 0.67 0.635249
Target:  5'- uGGAAaccuACGCCGAAguggacaaGGCCCUgGCC-GACc -3'
miRNA:   3'- -UCUU----UGUGGUUU--------UCGGGGgCGGaCUG- -5'
26621 3' -53.6 NC_005357.1 + 18713 0.67 0.635249
Target:  5'- cGAGGCACU---GGCCCgCGaCCUGGg -3'
miRNA:   3'- uCUUUGUGGuuuUCGGGgGC-GGACUg -5'
26621 3' -53.6 NC_005357.1 + 17937 0.67 0.612289
Target:  5'- cGGggGCAC--GAAGCCCCCGUa---- -3'
miRNA:   3'- -UCuuUGUGguUUUCGGGGGCGgacug -5'
26621 3' -53.6 NC_005357.1 + 11576 0.67 0.612289
Target:  5'- cGAAGCcauGCCGcccAGGGCCgCCGgCUGGCc -3'
miRNA:   3'- uCUUUG---UGGU---UUUCGGgGGCgGACUG- -5'
26621 3' -53.6 NC_005357.1 + 17989 0.67 0.612289
Target:  5'- cGuuACACCA--AGUCgCCGCCgGACu -3'
miRNA:   3'- uCuuUGUGGUuuUCGGgGGCGGaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.