Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26621 | 3' | -53.6 | NC_005357.1 | + | 13535 | 0.66 | 0.726011 |
Target: 5'- ---cGCGCCGAAcuGUCggCCGCCUGACu -3' miRNA: 3'- ucuuUGUGGUUUu-CGGg-GGCGGACUG- -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 19710 | 0.66 | 0.726011 |
Target: 5'- uGGAAGCugCAuaGAGGCgccgcgcaucgCCCUGCUUGGg -3' miRNA: 3'- -UCUUUGugGU--UUUCG-----------GGGGCGGACUg -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 35044 | 0.66 | 0.726011 |
Target: 5'- uGGAAGguCGCCGc-GGUgCCCGCCgcugGACg -3' miRNA: 3'- -UCUUU--GUGGUuuUCGgGGGCGGa---CUG- -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 25377 | 0.66 | 0.726011 |
Target: 5'- gGGcAGGCGCCAGAAGCCCUuuUGCgaGu- -3' miRNA: 3'- -UC-UUUGUGGUUUUCGGGG--GCGgaCug -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 31179 | 0.66 | 0.714888 |
Target: 5'- uGAAGCAC---GGGCCgcgcacguUCUGCCUGACg -3' miRNA: 3'- uCUUUGUGguuUUCGG--------GGGCGGACUG- -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 24149 | 0.66 | 0.703677 |
Target: 5'- ---cGCGCCu--GGCCCagCGCCUcGACg -3' miRNA: 3'- ucuuUGUGGuuuUCGGGg-GCGGA-CUG- -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 14988 | 0.66 | 0.703677 |
Target: 5'- --cAGCGCC-AGGGCCUgcggCCGCCgGGCg -3' miRNA: 3'- ucuUUGUGGuUUUCGGG----GGCGGaCUG- -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 24381 | 0.66 | 0.692389 |
Target: 5'- ---cGCGCCGguAAGGCCCCCaagcagcccGCC-GACa -3' miRNA: 3'- ucuuUGUGGU--UUUCGGGGG---------CGGaCUG- -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 31376 | 0.66 | 0.681038 |
Target: 5'- cGGAAGCugCucAAGGCguugaaCCCCGaCUGGCa -3' miRNA: 3'- -UCUUUGugGu-UUUCG------GGGGCgGACUG- -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 3788 | 0.66 | 0.681038 |
Target: 5'- -----uGCCGAAAGCCagCGCCUGGa -3' miRNA: 3'- ucuuugUGGUUUUCGGggGCGGACUg -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 29100 | 0.66 | 0.669636 |
Target: 5'- cGGcGACcuGCCGAAAGCCUacgCCGCCU-ACa -3' miRNA: 3'- -UCuUUG--UGGUUUUCGGG---GGCGGAcUG- -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 35618 | 0.67 | 0.64673 |
Target: 5'- cGAAacccGCGCCGu--GUCCCUGgCUGACc -3' miRNA: 3'- uCUU----UGUGGUuuuCGGGGGCgGACUG- -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 30120 | 0.67 | 0.64673 |
Target: 5'- uGAGgccGCGCCAGAAcacGCCgCCgGCCUGcACc -3' miRNA: 3'- uCUU---UGUGGUUUU---CGG-GGgCGGAC-UG- -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 19474 | 0.67 | 0.635249 |
Target: 5'- cAGGAAUACCAGAAGCagaCCgaaGCCUa-- -3' miRNA: 3'- -UCUUUGUGGUUUUCGg--GGg--CGGAcug -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 16512 | 0.67 | 0.635249 |
Target: 5'- uGGGcCACCGcAAGCUgcaagucgaaaCCCGCCUGAa -3' miRNA: 3'- uCUUuGUGGUuUUCGG-----------GGGCGGACUg -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 23038 | 0.67 | 0.635249 |
Target: 5'- uGGAAaccuACGCCGAAguggacaaGGCCCUgGCC-GACc -3' miRNA: 3'- -UCUU----UGUGGUUU--------UCGGGGgCGGaCUG- -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 18713 | 0.67 | 0.635249 |
Target: 5'- cGAGGCACU---GGCCCgCGaCCUGGg -3' miRNA: 3'- uCUUUGUGGuuuUCGGGgGC-GGACUg -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 17937 | 0.67 | 0.612289 |
Target: 5'- cGGggGCAC--GAAGCCCCCGUa---- -3' miRNA: 3'- -UCuuUGUGguUUUCGGGGGCGgacug -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 11576 | 0.67 | 0.612289 |
Target: 5'- cGAAGCcauGCCGcccAGGGCCgCCGgCUGGCc -3' miRNA: 3'- uCUUUG---UGGU---UUUCGGgGGCgGACUG- -5' |
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26621 | 3' | -53.6 | NC_005357.1 | + | 17989 | 0.67 | 0.612289 |
Target: 5'- cGuuACACCA--AGUCgCCGCCgGACu -3' miRNA: 3'- uCuuUGUGGUuuUCGGgGGCGGaCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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