miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26621 3' -53.6 NC_005357.1 + 25377 0.66 0.726011
Target:  5'- gGGcAGGCGCCAGAAGCCCUuuUGCgaGu- -3'
miRNA:   3'- -UC-UUUGUGGUUUUCGGGG--GCGgaCug -5'
26621 3' -53.6 NC_005357.1 + 17937 0.67 0.612289
Target:  5'- cGGggGCAC--GAAGCCCCCGUa---- -3'
miRNA:   3'- -UCuuUGUGguUUUCGGGGGCGgacug -5'
26621 3' -53.6 NC_005357.1 + 30120 0.67 0.64673
Target:  5'- uGAGgccGCGCCAGAAcacGCCgCCgGCCUGcACc -3'
miRNA:   3'- uCUU---UGUGGUUUU---CGG-GGgCGGAC-UG- -5'
26621 3' -53.6 NC_005357.1 + 3788 0.66 0.681038
Target:  5'- -----uGCCGAAAGCCagCGCCUGGa -3'
miRNA:   3'- ucuuugUGGUUUUCGGggGCGGACUg -5'
26621 3' -53.6 NC_005357.1 + 31376 0.66 0.681038
Target:  5'- cGGAAGCugCucAAGGCguugaaCCCCGaCUGGCa -3'
miRNA:   3'- -UCUUUGugGu-UUUCG------GGGGCgGACUG- -5'
26621 3' -53.6 NC_005357.1 + 24149 0.66 0.703677
Target:  5'- ---cGCGCCu--GGCCCagCGCCUcGACg -3'
miRNA:   3'- ucuuUGUGGuuuUCGGGg-GCGGA-CUG- -5'
26621 3' -53.6 NC_005357.1 + 31179 0.66 0.714888
Target:  5'- uGAAGCAC---GGGCCgcgcacguUCUGCCUGACg -3'
miRNA:   3'- uCUUUGUGguuUUCGG--------GGGCGGACUG- -5'
26621 3' -53.6 NC_005357.1 + 35044 0.66 0.726011
Target:  5'- uGGAAGguCGCCGc-GGUgCCCGCCgcugGACg -3'
miRNA:   3'- -UCUUU--GUGGUuuUCGgGGGCGGa---CUG- -5'
26621 3' -53.6 NC_005357.1 + 19710 0.66 0.726011
Target:  5'- uGGAAGCugCAuaGAGGCgccgcgcaucgCCCUGCUUGGg -3'
miRNA:   3'- -UCUUUGugGU--UUUCG-----------GGGGCGGACUg -5'
26621 3' -53.6 NC_005357.1 + 11576 0.67 0.612289
Target:  5'- cGAAGCcauGCCGcccAGGGCCgCCGgCUGGCc -3'
miRNA:   3'- uCUUUG---UGGU---UUUCGGgGGCgGACUG- -5'
26621 3' -53.6 NC_005357.1 + 17989 0.67 0.612289
Target:  5'- cGuuACACCA--AGUCgCCGCCgGACu -3'
miRNA:   3'- uCuuUGUGGUuuUCGGgGGCGGaCUG- -5'
26621 3' -53.6 NC_005357.1 + 31683 0.68 0.600832
Target:  5'- -cAAGCACCAGuaacuGCUgcagcaCCGCCUGACc -3'
miRNA:   3'- ucUUUGUGGUUuu---CGGg-----GGCGGACUG- -5'
26621 3' -53.6 NC_005357.1 + 37971 0.71 0.397985
Target:  5'- aAGGAACuggaAGAAGCCgCaCGCCUGGCg -3'
miRNA:   3'- -UCUUUGugg-UUUUCGGgG-GCGGACUG- -5'
26621 3' -53.6 NC_005357.1 + 34443 0.7 0.447446
Target:  5'- --cGACGCCGugguGCUgCUGCCUGACg -3'
miRNA:   3'- ucuUUGUGGUuuu-CGGgGGCGGACUG- -5'
26621 3' -53.6 NC_005357.1 + 10015 0.7 0.478709
Target:  5'- ---cGCGCCc--GGCCCCCGcCCUGGu -3'
miRNA:   3'- ucuuUGUGGuuuUCGGGGGC-GGACUg -5'
26621 3' -53.6 NC_005357.1 + 20536 0.69 0.521976
Target:  5'- cAGaAAGCGCCAcacgaugcGgcGCCCCCGCUUGcuGCu -3'
miRNA:   3'- -UC-UUUGUGGU--------UuuCGGGGGCGGAC--UG- -5'
26621 3' -53.6 NC_005357.1 + 37836 0.69 0.533034
Target:  5'- --cGAgGCCGAGcAGUUCCuCGCCUGGCg -3'
miRNA:   3'- ucuUUgUGGUUU-UCGGGG-GCGGACUG- -5'
26621 3' -53.6 NC_005357.1 + 36880 0.68 0.55202
Target:  5'- cGAAGCcaugcgcgugauugACCAGAAGCUgCCGgCCUGGa -3'
miRNA:   3'- uCUUUG--------------UGGUUUUCGGgGGC-GGACUg -5'
26621 3' -53.6 NC_005357.1 + 7163 0.68 0.566674
Target:  5'- uGAAGC-CCA--GGCCCgaCGCgCUGACg -3'
miRNA:   3'- uCUUUGuGGUuuUCGGGg-GCG-GACUG- -5'
26621 3' -53.6 NC_005357.1 + 41163 0.68 0.566674
Target:  5'- cGGGAAUACC---GGCgCUCGCCgGACg -3'
miRNA:   3'- -UCUUUGUGGuuuUCGgGGGCGGaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.