miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26621 3' -53.6 NC_005357.1 + 41163 0.68 0.566674
Target:  5'- cGGGAAUACC---GGCgCUCGCCgGACg -3'
miRNA:   3'- -UCUUUGUGGuuuUCGgGGGCGGaCUG- -5'
26621 3' -53.6 NC_005357.1 + 31683 0.68 0.600832
Target:  5'- -cAAGCACCAGuaacuGCUgcagcaCCGCCUGACc -3'
miRNA:   3'- ucUUUGUGGUUuu---CGGg-----GGCGGACUG- -5'
26621 3' -53.6 NC_005357.1 + 18713 0.67 0.635249
Target:  5'- cGAGGCACU---GGCCCgCGaCCUGGg -3'
miRNA:   3'- uCUUUGUGGuuuUCGGGgGC-GGACUg -5'
26621 3' -53.6 NC_005357.1 + 19474 0.67 0.635249
Target:  5'- cAGGAAUACCAGAAGCagaCCgaaGCCUa-- -3'
miRNA:   3'- -UCUUUGUGGUUUUCGg--GGg--CGGAcug -5'
26621 3' -53.6 NC_005357.1 + 23038 0.67 0.635249
Target:  5'- uGGAAaccuACGCCGAAguggacaaGGCCCUgGCC-GACc -3'
miRNA:   3'- -UCUU----UGUGGUUU--------UCGGGGgCGGaCUG- -5'
26621 3' -53.6 NC_005357.1 + 35618 0.67 0.64673
Target:  5'- cGAAacccGCGCCGu--GUCCCUGgCUGACc -3'
miRNA:   3'- uCUU----UGUGGUuuuCGGGGGCgGACUG- -5'
26621 3' -53.6 NC_005357.1 + 29100 0.66 0.669636
Target:  5'- cGGcGACcuGCCGAAAGCCUacgCCGCCU-ACa -3'
miRNA:   3'- -UCuUUG--UGGUUUUCGGG---GGCGGAcUG- -5'
26621 3' -53.6 NC_005357.1 + 24381 0.66 0.692389
Target:  5'- ---cGCGCCGguAAGGCCCCCaagcagcccGCC-GACa -3'
miRNA:   3'- ucuuUGUGGU--UUUCGGGGG---------CGGaCUG- -5'
26621 3' -53.6 NC_005357.1 + 16512 0.67 0.635249
Target:  5'- uGGGcCACCGcAAGCUgcaagucgaaaCCCGCCUGAa -3'
miRNA:   3'- uCUUuGUGGUuUUCGG-----------GGGCGGACUg -5'
26621 3' -53.6 NC_005357.1 + 28211 0.68 0.555392
Target:  5'- ---cGCGCCAagGAAGCCgCgcugCGCCUGACc -3'
miRNA:   3'- ucuuUGUGGU--UUUCGGgG----GCGGACUG- -5'
26621 3' -53.6 NC_005357.1 + 21810 0.69 0.521976
Target:  5'- cAGGccGACACCGAccuGCgaCgCCGCCUGGCg -3'
miRNA:   3'- -UCU--UUGUGGUUuu-CGg-G-GGCGGACUG- -5'
26621 3' -53.6 NC_005357.1 + 10521 0.69 0.511007
Target:  5'- cGAAACGCCGcAGGCaCUCgGCCUcGAUg -3'
miRNA:   3'- uCUUUGUGGUuUUCG-GGGgCGGA-CUG- -5'
26621 3' -53.6 NC_005357.1 + 36034 0.7 0.478709
Target:  5'- cGAcuACACCGGGccggccGGCCUgCGCCUGAUu -3'
miRNA:   3'- uCUu-UGUGGUUU------UCGGGgGCGGACUG- -5'
26621 3' -53.6 NC_005357.1 + 28058 0.7 0.457743
Target:  5'- cGcgGCGCgGAu-GCCCCCGCCUuccagGACa -3'
miRNA:   3'- uCuuUGUGgUUuuCGGGGGCGGA-----CUG- -5'
26621 3' -53.6 NC_005357.1 + 19938 0.71 0.41735
Target:  5'- cGGGcAugACCAGcccAGCCCgcccugguuCCGCCUGACa -3'
miRNA:   3'- -UCU-UugUGGUUu--UCGGG---------GGCGGACUG- -5'
26621 3' -53.6 NC_005357.1 + 39015 0.72 0.370043
Target:  5'- uAGcgGgGCCGAAAGgCCCCGCCaaGGCa -3'
miRNA:   3'- -UCuuUgUGGUUUUCgGGGGCGGa-CUG- -5'
26621 3' -53.6 NC_005357.1 + 1741 0.76 0.207466
Target:  5'- uAGAugAACACCGGGcggucauggccGGCCUgCGCCUGGCg -3'
miRNA:   3'- -UCU--UUGUGGUUU-----------UCGGGgGCGGACUG- -5'
26621 3' -53.6 NC_005357.1 + 14988 0.66 0.703677
Target:  5'- --cAGCGCC-AGGGCCUgcggCCGCCgGGCg -3'
miRNA:   3'- ucuUUGUGGuUUUCGGG----GGCGGaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.