miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26621 5' -58.6 NC_005357.1 + 20175 0.66 0.490937
Target:  5'- uGCGCCuugcGGCUuc-GCCuuGUCGUCGCCc -3'
miRNA:   3'- -CGCGGcu--CCGAcucCGG--UAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 20263 0.72 0.190616
Target:  5'- -gGCUGuuGCUGcuguuGGCCGUCGUUGCCc -3'
miRNA:   3'- cgCGGCucCGACu----CCGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 20749 0.66 0.490937
Target:  5'- gGCGCCguaGAGGCgcuGcGCCGcgcucgacUCAUCGCg -3'
miRNA:   3'- -CGCGG---CUCCGacuC-CGGU--------AGUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 20959 0.69 0.326406
Target:  5'- aGCGCau-GGUcGAGGCCAaCAUCcuGCCg -3'
miRNA:   3'- -CGCGgcuCCGaCUCCGGUaGUAG--CGG- -5'
26621 5' -58.6 NC_005357.1 + 23545 0.69 0.303282
Target:  5'- cGCgGUCGAuGGCcucGGCCGaCAUCGCCg -3'
miRNA:   3'- -CG-CGGCU-CCGacuCCGGUaGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 23948 0.69 0.303282
Target:  5'- gGCGCCGcccGGC-GAGGUCggCAuUUGCCg -3'
miRNA:   3'- -CGCGGCu--CCGaCUCCGGuaGU-AGCGG- -5'
26621 5' -58.6 NC_005357.1 + 24051 0.67 0.431501
Target:  5'- gGCGCCaucGGCa-AGGCCAaCcUCGCCg -3'
miRNA:   3'- -CGCGGcu-CCGacUCCGGUaGuAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 24695 0.66 0.460712
Target:  5'- aCGCCcAGGCUGu--CCAUCggUGCCa -3'
miRNA:   3'- cGCGGcUCCGACuccGGUAGuaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 26171 0.69 0.318555
Target:  5'- cGCGCgCGAGGCcaacGCCAUC--CGCCa -3'
miRNA:   3'- -CGCG-GCUCCGacucCGGUAGuaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 27491 0.68 0.354164
Target:  5'- uCGCCGAguugggcgcgcagucGGCacuUGAGGCCGgccagCAgcagaUCGCCg -3'
miRNA:   3'- cGCGGCU---------------CCG---ACUCCGGUa----GU-----AGCGG- -5'
26621 5' -58.6 NC_005357.1 + 27965 0.66 0.441119
Target:  5'- gGCGagcaCGuccucgguGGGCUG-GGCCAUCAggcuguaGCCg -3'
miRNA:   3'- -CGCg---GC--------UCCGACuCCGGUAGUag-----CGG- -5'
26621 5' -58.6 NC_005357.1 + 28724 0.68 0.376489
Target:  5'- gGCGCacgCGAGGaUGAGcGCCuuggCAUCGUCc -3'
miRNA:   3'- -CGCG---GCUCCgACUC-CGGua--GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 28824 0.7 0.247836
Target:  5'- cGCGCCGucgucGGGUUGcGGCCGgacUUGCCg -3'
miRNA:   3'- -CGCGGC-----UCCGACuCCGGUaguAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 29090 0.66 0.480757
Target:  5'- gGCGCCGAGGUc-AGGCCcgugCGggacUUGCUg -3'
miRNA:   3'- -CGCGGCUCCGacUCCGGua--GU----AGCGG- -5'
26621 5' -58.6 NC_005357.1 + 30334 0.74 0.141383
Target:  5'- cGCGUCGGGGuCUuuGGCCuuGUCGUCGCg -3'
miRNA:   3'- -CGCGGCUCC-GAcuCCGG--UAGUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 31030 0.66 0.460712
Target:  5'- -gGCCGAGGCaaucgcgcGGGCCAaCGUgCGCg -3'
miRNA:   3'- cgCGGCUCCGac------UCCGGUaGUA-GCGg -5'
26621 5' -58.6 NC_005357.1 + 31992 0.67 0.435333
Target:  5'- gGCGCCauugccaagcuguugGAaaugaaaaguGGC-GAGGCCAUCGgcgCGCUg -3'
miRNA:   3'- -CGCGG---------------CU----------CCGaCUCCGGUAGUa--GCGG- -5'
26621 5' -58.6 NC_005357.1 + 32369 0.67 0.422007
Target:  5'- cCGCCGAGGCcccGGCCGcccagCAggaaGCCa -3'
miRNA:   3'- cGCGGCUCCGacuCCGGUa----GUag--CGG- -5'
26621 5' -58.6 NC_005357.1 + 32468 0.68 0.376489
Target:  5'- cUGCCGAGGUgGGGGCgGcCGaugCGCCc -3'
miRNA:   3'- cGCGGCUCCGaCUCCGgUaGUa--GCGG- -5'
26621 5' -58.6 NC_005357.1 + 32588 0.66 0.490937
Target:  5'- cCGCCGAcGCUGugaccaagcuGGCCcgCGUCaaggGCCg -3'
miRNA:   3'- cGCGGCUcCGACu---------CCGGuaGUAG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.