miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26621 5' -58.6 NC_005357.1 + 13502 0.69 0.295859
Target:  5'- cGCGCCuuuGGGC-GAGguaagcgguuuGCCGUCcgCGCCg -3'
miRNA:   3'- -CGCGGc--UCCGaCUC-----------CGGUAGuaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 13874 0.66 0.490937
Target:  5'- cGCGCCGcgauGGCcGGcGGCCgcaagGUCGU-GCCg -3'
miRNA:   3'- -CGCGGCu---CCGaCU-CCGG-----UAGUAgCGG- -5'
26621 5' -58.6 NC_005357.1 + 13904 0.66 0.480757
Target:  5'- gGCGUCGGGGUUGuuccaguucaGGGCgAU-GUCGCg -3'
miRNA:   3'- -CGCGGCUCCGAC----------UCCGgUAgUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 14085 0.69 0.302533
Target:  5'- cGCGCugcccgaCGAGGCcaAGGCCAUCGaguccgaCGCCg -3'
miRNA:   3'- -CGCG-------GCUCCGacUCCGGUAGUa------GCGG- -5'
26621 5' -58.6 NC_005357.1 + 14860 0.68 0.350813
Target:  5'- aGCGCCGcacGCUGGGcGCCuuuaaGUUGCCc -3'
miRNA:   3'- -CGCGGCuc-CGACUC-CGGuag--UAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 14920 0.76 0.095601
Target:  5'- cGCGCCGAGaaGCUGGcGGCCGagGcCGCCg -3'
miRNA:   3'- -CGCGGCUC--CGACU-CCGGUagUaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 14989 0.67 0.41264
Target:  5'- aGCGCCaGGGcCUGcGGCCGccgggcgCGgugCGCCa -3'
miRNA:   3'- -CGCGGcUCC-GACuCCGGUa------GUa--GCGG- -5'
26621 5' -58.6 NC_005357.1 + 15468 0.68 0.376489
Target:  5'- -gGCCGAaGCUGccGuCCAguugCAUCGCCa -3'
miRNA:   3'- cgCGGCUcCGACucC-GGUa---GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 15871 0.69 0.310085
Target:  5'- cGCGCCGAucuguugcucgGGCacguaggUGAGGCCcagCAgcUUGCCg -3'
miRNA:   3'- -CGCGGCU-----------CCG-------ACUCCGGua-GU--AGCGG- -5'
26621 5' -58.6 NC_005357.1 + 16274 0.67 0.431501
Target:  5'- cGCGCgCGgccacccggaAGGCUacccGGUCGUCGUCGCg -3'
miRNA:   3'- -CGCG-GC----------UCCGAcu--CCGGUAGUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 16646 0.75 0.113198
Target:  5'- cGCGCCGcGcGCaucGcGGCCAUCGUUGCCg -3'
miRNA:   3'- -CGCGGCuC-CGa--CuCCGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 17850 0.66 0.460712
Target:  5'- aCGCCGGacGGCccGAccguGGCCGgccucgcCAUCGCCg -3'
miRNA:   3'- cGCGGCU--CCGa-CU----CCGGUa------GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 18268 0.68 0.3344
Target:  5'- uGCGCCGAGaacUUGccGGCCGUCAgcggGCCg -3'
miRNA:   3'- -CGCGGCUCc--GACu-CCGGUAGUag--CGG- -5'
26621 5' -58.6 NC_005357.1 + 18279 0.68 0.376489
Target:  5'- cCGUCGAGGCgcuGGGCCAggcgCGCa -3'
miRNA:   3'- cGCGGCUCCGac-UCCGGUaguaGCGg -5'
26621 5' -58.6 NC_005357.1 + 18396 0.67 0.394296
Target:  5'- gGCGCCGGuGGC---GGCCA-CGUCGgCg -3'
miRNA:   3'- -CGCGGCU-CCGacuCCGGUaGUAGCgG- -5'
26621 5' -58.6 NC_005357.1 + 18468 0.67 0.41264
Target:  5'- gGCGCCGGcGGCgucGGCCGauUCGUCcaCCg -3'
miRNA:   3'- -CGCGGCU-CCGacuCCGGU--AGUAGc-GG- -5'
26621 5' -58.6 NC_005357.1 + 18829 0.72 0.185581
Target:  5'- --aCCgGGGGCUGcacgcaugacGGCCAUCGUCGCCc -3'
miRNA:   3'- cgcGG-CUCCGACu---------CCGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 18875 0.72 0.190107
Target:  5'- cUGCCGGcgaugucGGCcGAGGCCAUCGaccgcgugCGCCg -3'
miRNA:   3'- cGCGGCU-------CCGaCUCCGGUAGUa-------GCGG- -5'
26621 5' -58.6 NC_005357.1 + 19212 0.72 0.206447
Target:  5'- -gGCCGAGGCcGAGGCCGaauUCAccgacgagGCCg -3'
miRNA:   3'- cgCGGCUCCGaCUCCGGU---AGUag------CGG- -5'
26621 5' -58.6 NC_005357.1 + 19725 0.75 0.127981
Target:  5'- gGCGCCGcgcaucgcccugcuuGGGCUGGuuGCCGUUGUUGCCg -3'
miRNA:   3'- -CGCGGC---------------UCCGACUc-CGGUAGUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.