Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 507 | 0.66 | 0.47068 |
Target: 5'- uGCGCCGcggcggcuugcAGGCgguucUGuucGGCCGUCAcCGCg -3' miRNA: 3'- -CGCGGC-----------UCCG-----ACu--CCGGUAGUaGCGg -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 1992 | 0.66 | 0.441119 |
Target: 5'- cUGCCGuGGCugaucuUGAGGCCcaggCGcUCGCUg -3' miRNA: 3'- cGCGGCuCCG------ACUCCGGua--GU-AGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 2444 | 0.67 | 0.41264 |
Target: 5'- gGCGCCGAaaCUGcGGCCcaggCGcUCGCCu -3' miRNA: 3'- -CGCGGCUccGACuCCGGua--GU-AGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 3870 | 0.8 | 0.052361 |
Target: 5'- gGCGCCGucGCUGuAGGCCGcgcugcCGUCGCCg -3' miRNA: 3'- -CGCGGCucCGAC-UCCGGUa-----GUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 4197 | 0.69 | 0.303282 |
Target: 5'- gGCGCCGAaaaguuggaaucGGCgcgcaccGuGCCAUCGUCGCa -3' miRNA: 3'- -CGCGGCU------------CCGacu----C-CGGUAGUAGCGg -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 4528 | 0.7 | 0.279324 |
Target: 5'- aGCGCaucgcaGAccacgaaggucuugGGCuUGAGGCCGaaGUCGCCg -3' miRNA: 3'- -CGCGg-----CU--------------CCG-ACUCCGGUagUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 4823 | 0.67 | 0.431501 |
Target: 5'- -gGUCGGGGCcGGcGCCGUCGUCGa- -3' miRNA: 3'- cgCGGCUCCGaCUcCGGUAGUAGCgg -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 6277 | 0.66 | 0.450857 |
Target: 5'- cGCGCUG-GGC--AGGCCGaacagGUCGCCc -3' miRNA: 3'- -CGCGGCuCCGacUCCGGUag---UAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 6524 | 0.66 | 0.460712 |
Target: 5'- uUGgCGAGuuUuucGGGGUCGUCGUCGCCc -3' miRNA: 3'- cGCgGCUCcgA---CUCCGGUAGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 8639 | 0.67 | 0.41264 |
Target: 5'- gGUGgCGAGGUcgccGGCCuUCAUCGCg -3' miRNA: 3'- -CGCgGCUCCGacu-CCGGuAGUAGCGg -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 10065 | 0.69 | 0.303282 |
Target: 5'- aGCGuCCGAGGCgucgucGGGGCgAgCcgUGCCa -3' miRNA: 3'- -CGC-GGCUCCGa-----CUCCGgUaGuaGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 11843 | 0.69 | 0.324036 |
Target: 5'- cGCGCCGcGGUUGGccugggcgaaccccGcGCCAaUAUCGCCc -3' miRNA: 3'- -CGCGGCuCCGACU--------------C-CGGUaGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 11975 | 0.66 | 0.464686 |
Target: 5'- cGCGCCcccuGGCaacugauucagggcGAGGCCcugcccgcgcUCAUCGCCa -3' miRNA: 3'- -CGCGGcu--CCGa-------------CUCCGGu---------AGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 12304 | 0.68 | 0.359232 |
Target: 5'- -gGCCGGcGGCgUGuucuggcgcGGCC-UCAUCGCCu -3' miRNA: 3'- cgCGGCU-CCG-ACu--------CCGGuAGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 12449 | 0.73 | 0.180663 |
Target: 5'- cCGuUCGAcGGCUGcauccAGGCCGUCGUgCGCCg -3' miRNA: 3'- cGC-GGCU-CCGAC-----UCCGGUAGUA-GCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 12687 | 0.66 | 0.441119 |
Target: 5'- cGUGUCGAGGCccgccuUGAuagccuGGCUGUUcaaGUCGCCc -3' miRNA: 3'- -CGCGGCUCCG------ACU------CCGGUAG---UAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 13023 | 0.67 | 0.385324 |
Target: 5'- aGCGCaGuGGC-GAcGGCCucGUCAUCGCg -3' miRNA: 3'- -CGCGgCuCCGaCU-CCGG--UAGUAGCGg -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 13052 | 0.7 | 0.280732 |
Target: 5'- cGCGCCGAguccgagGGCUGgggcaAGGCCAcCggCGCg -3' miRNA: 3'- -CGCGGCU-------CCGAC-----UCCGGUaGuaGCGg -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 13129 | 0.73 | 0.175861 |
Target: 5'- aGUGCUG-GGCaaGGGCCAgcaguUCGUCGCCu -3' miRNA: 3'- -CGCGGCuCCGacUCCGGU-----AGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 13304 | 0.71 | 0.237807 |
Target: 5'- cGCGCCGGGGCcgGcguuguaggcggcguAGGCUuUCggcagGUCGCCg -3' miRNA: 3'- -CGCGGCUCCGa-C---------------UCCGGuAG-----UAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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