miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26621 5' -58.6 NC_005357.1 + 41810 1.14 0.000144
Target:  5'- cGCGCCGAGGCUGAGGCCAUCAUCGCCg -3'
miRNA:   3'- -CGCGGCUCCGACUCCGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 35080 0.81 0.045288
Target:  5'- aCGCCGAGGUcGAGGCCGcgcUCAagGCCa -3'
miRNA:   3'- cGCGGCUCCGaCUCCGGU---AGUagCGG- -5'
26621 5' -58.6 NC_005357.1 + 3870 0.8 0.052361
Target:  5'- gGCGCCGucGCUGuAGGCCGcgcugcCGUCGCCg -3'
miRNA:   3'- -CGCGGCucCGAC-UCCGGUa-----GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 14920 0.76 0.095601
Target:  5'- cGCGCCGAGaaGCUGGcGGCCGagGcCGCCg -3'
miRNA:   3'- -CGCGGCUC--CGACU-CCGGUagUaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 16646 0.75 0.113198
Target:  5'- cGCGCCGcGcGCaucGcGGCCAUCGUUGCCg -3'
miRNA:   3'- -CGCGGCuC-CGa--CuCCGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 19725 0.75 0.127981
Target:  5'- gGCGCCGcgcaucgcccugcuuGGGCUGGuuGCCGUUGUUGCCg -3'
miRNA:   3'- -CGCGGC---------------UCCGACUc-CGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 30334 0.74 0.141383
Target:  5'- cGCGUCGGGGuCUuuGGCCuuGUCGUCGCg -3'
miRNA:   3'- -CGCGGCUCC-GAcuCCGG--UAGUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 13129 0.73 0.175861
Target:  5'- aGUGCUG-GGCaaGGGCCAgcaguUCGUCGCCu -3'
miRNA:   3'- -CGCGGCuCCGacUCCGGU-----AGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 12449 0.73 0.180663
Target:  5'- cCGuUCGAcGGCUGcauccAGGCCGUCGUgCGCCg -3'
miRNA:   3'- cGC-GGCU-CCGAC-----UCCGGUAGUA-GCGG- -5'
26621 5' -58.6 NC_005357.1 + 18829 0.72 0.185581
Target:  5'- --aCCgGGGGCUGcacgcaugacGGCCAUCGUCGCCc -3'
miRNA:   3'- cgcGG-CUCCGACu---------CCGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 18875 0.72 0.190107
Target:  5'- cUGCCGGcgaugucGGCcGAGGCCAUCGaccgcgugCGCCg -3'
miRNA:   3'- cGCGGCU-------CCGaCUCCGGUAGUa-------GCGG- -5'
26621 5' -58.6 NC_005357.1 + 20263 0.72 0.190616
Target:  5'- -gGCUGuuGCUGcuguuGGCCGUCGUUGCCc -3'
miRNA:   3'- cgCGGCucCGACu----CCGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 19212 0.72 0.206447
Target:  5'- -gGCCGAGGCcGAGGCCGaauUCAccgacgagGCCg -3'
miRNA:   3'- cgCGGCUCCGaCUCCGGU---AGUag------CGG- -5'
26621 5' -58.6 NC_005357.1 + 37519 0.71 0.217623
Target:  5'- cGCuGCCGAcguuuccaccguGGCcgaaaacGAGGCCGcCGUCGCCg -3'
miRNA:   3'- -CG-CGGCU------------CCGa------CUCCGGUaGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 35567 0.71 0.22812
Target:  5'- cGUGCCGAcguGGUggGGGGCCuacgaaaaggcCGUCGCCg -3'
miRNA:   3'- -CGCGGCU---CCGa-CUCCGGua---------GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 34474 0.71 0.229313
Target:  5'- cGCGCCGAGGCcacGGGcaaGCUGUCGgaaauccucgCGCCg -3'
miRNA:   3'- -CGCGGCUCCGa--CUC---CGGUAGUa---------GCGG- -5'
26621 5' -58.6 NC_005357.1 + 13304 0.71 0.237807
Target:  5'- cGCGCCGGGGCcgGcguuguaggcggcguAGGCUuUCggcagGUCGCCg -3'
miRNA:   3'- -CGCGGCUCCGa-C---------------UCCGGuAG-----UAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 34399 0.71 0.241528
Target:  5'- aGCGUCGAGGCUGucaccGGCgAagCuggCGCCa -3'
miRNA:   3'- -CGCGGCUCCGACu----CCGgUa-Gua-GCGG- -5'
26621 5' -58.6 NC_005357.1 + 28824 0.7 0.247836
Target:  5'- cGCGCCGucgucGGGUUGcGGCCGgacUUGCCg -3'
miRNA:   3'- -CGCGGC-----UCCGACuCCGGUaguAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 35200 0.7 0.256897
Target:  5'- uCGCCGAGGgUGAGcgcggcgcagaugcuGCCGUggaCAUCGCg -3'
miRNA:   3'- cGCGGCUCCgACUC---------------CGGUA---GUAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.