miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26621 5' -58.6 NC_005357.1 + 14860 0.68 0.350813
Target:  5'- aGCGCCGcacGCUGGGcGCCuuuaaGUUGCCc -3'
miRNA:   3'- -CGCGGCuc-CGACUC-CGGuag--UAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 10065 0.69 0.303282
Target:  5'- aGCGuCCGAGGCgucgucGGGGCgAgCcgUGCCa -3'
miRNA:   3'- -CGC-GGCUCCGa-----CUCCGgUaGuaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 23545 0.69 0.303282
Target:  5'- cGCgGUCGAuGGCcucGGCCGaCAUCGCCg -3'
miRNA:   3'- -CG-CGGCU-CCGacuCCGGUaGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 23948 0.69 0.303282
Target:  5'- gGCGCCGcccGGC-GAGGUCggCAuUUGCCg -3'
miRNA:   3'- -CGCGGCu--CCGaCUCCGGuaGU-AGCGG- -5'
26621 5' -58.6 NC_005357.1 + 38726 0.69 0.303282
Target:  5'- uGCGCCGca--UGGGGCagcgCGUCGCCg -3'
miRNA:   3'- -CGCGGCuccgACUCCGgua-GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 35161 0.69 0.303282
Target:  5'- cCGCCGAGaaGCUGcacaAGGCCGgcgaCAUCgGCCc -3'
miRNA:   3'- cGCGGCUC--CGAC----UCCGGUa---GUAG-CGG- -5'
26621 5' -58.6 NC_005357.1 + 15871 0.69 0.310085
Target:  5'- cGCGCCGAucuguugcucgGGCacguaggUGAGGCCcagCAgcUUGCCg -3'
miRNA:   3'- -CGCGGCU-----------CCG-------ACUCCGGua-GU--AGCGG- -5'
26621 5' -58.6 NC_005357.1 + 11843 0.69 0.324036
Target:  5'- cGCGCCGcGGUUGGccugggcgaaccccGcGCCAaUAUCGCCc -3'
miRNA:   3'- -CGCGGCuCCGACU--------------C-CGGUaGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 18268 0.68 0.3344
Target:  5'- uGCGCCGAGaacUUGccGGCCGUCAgcggGCCg -3'
miRNA:   3'- -CGCGGCUCc--GACu-CCGGUAGUag--CGG- -5'
26621 5' -58.6 NC_005357.1 + 4197 0.69 0.303282
Target:  5'- gGCGCCGAaaaguuggaaucGGCgcgcaccGuGCCAUCGUCGCa -3'
miRNA:   3'- -CGCGGCU------------CCGacu----C-CGGUAGUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 13502 0.69 0.295859
Target:  5'- cGCGCCuuuGGGC-GAGguaagcgguuuGCCGUCcgCGCCg -3'
miRNA:   3'- -CGCGGc--UCCGaCUC-----------CGGUAGuaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 36096 0.7 0.267582
Target:  5'- gGCGCUuuGGCUGGGGCgGaacgCGCCg -3'
miRNA:   3'- -CGCGGcuCCGACUCCGgUaguaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 35080 0.81 0.045288
Target:  5'- aCGCCGAGGUcGAGGCCGcgcUCAagGCCa -3'
miRNA:   3'- cGCGGCUCCGaCUCCGGU---AGUagCGG- -5'
26621 5' -58.6 NC_005357.1 + 3870 0.8 0.052361
Target:  5'- gGCGCCGucGCUGuAGGCCGcgcugcCGUCGCCg -3'
miRNA:   3'- -CGCGGCucCGAC-UCCGGUa-----GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 19725 0.75 0.127981
Target:  5'- gGCGCCGcgcaucgcccugcuuGGGCUGGuuGCCGUUGUUGCCg -3'
miRNA:   3'- -CGCGGC---------------UCCGACUc-CGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 30334 0.74 0.141383
Target:  5'- cGCGUCGGGGuCUuuGGCCuuGUCGUCGCg -3'
miRNA:   3'- -CGCGGCUCC-GAcuCCGG--UAGUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 20263 0.72 0.190616
Target:  5'- -gGCUGuuGCUGcuguuGGCCGUCGUUGCCc -3'
miRNA:   3'- cgCGGCucCGACu----CCGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 13304 0.71 0.237807
Target:  5'- cGCGCCGGGGCcgGcguuguaggcggcguAGGCUuUCggcagGUCGCCg -3'
miRNA:   3'- -CGCGGCUCCGa-C---------------UCCGGuAG-----UAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 34399 0.71 0.241528
Target:  5'- aGCGUCGAGGCUGucaccGGCgAagCuggCGCCa -3'
miRNA:   3'- -CGCGGCUCCGACu----CCGgUa-Gua-GCGG- -5'
26621 5' -58.6 NC_005357.1 + 28824 0.7 0.247836
Target:  5'- cGCGCCGucgucGGGUUGcGGCCGgacUUGCCg -3'
miRNA:   3'- -CGCGGC-----UCCGACuCCGGUaguAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.