Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 14920 | 0.76 | 0.095601 |
Target: 5'- cGCGCCGAGaaGCUGGcGGCCGagGcCGCCg -3' miRNA: 3'- -CGCGGCUC--CGACU-CCGGUagUaGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 20959 | 0.69 | 0.326406 |
Target: 5'- aGCGCau-GGUcGAGGCCAaCAUCcuGCCg -3' miRNA: 3'- -CGCGgcuCCGaCUCCGGUaGUAG--CGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 12304 | 0.68 | 0.359232 |
Target: 5'- -gGCCGGcGGCgUGuucuggcgcGGCC-UCAUCGCCu -3' miRNA: 3'- cgCGGCU-CCG-ACu--------CCGGuAGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 38170 | 0.66 | 0.490937 |
Target: 5'- aUGCCGGcGCUGAcGGCCggCAccgacuaCGCCa -3' miRNA: 3'- cGCGGCUcCGACU-CCGGuaGUa------GCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 18829 | 0.72 | 0.185581 |
Target: 5'- --aCCgGGGGCUGcacgcaugacGGCCAUCGUCGCCc -3' miRNA: 3'- cgcGG-CUCCGACu---------CCGGUAGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 18875 | 0.72 | 0.190107 |
Target: 5'- cUGCCGGcgaugucGGCcGAGGCCAUCGaccgcgugCGCCg -3' miRNA: 3'- cGCGGCU-------CCGaCUCCGGUAGUa-------GCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 37519 | 0.71 | 0.217623 |
Target: 5'- cGCuGCCGAcguuuccaccguGGCcgaaaacGAGGCCGcCGUCGCCg -3' miRNA: 3'- -CG-CGGCU------------CCGa------CUCCGGUaGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 35567 | 0.71 | 0.22812 |
Target: 5'- cGUGCCGAcguGGUggGGGGCCuacgaaaaggcCGUCGCCg -3' miRNA: 3'- -CGCGGCU---CCGa-CUCCGGua---------GUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 41610 | 0.7 | 0.260862 |
Target: 5'- -gGCCGAcguucggcaagGGCUG-GGCgCGgcgCGUCGCCg -3' miRNA: 3'- cgCGGCU-----------CCGACuCCG-GUa--GUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 26171 | 0.69 | 0.318555 |
Target: 5'- cGCGCgCGAGGCcaacGCCAUC--CGCCa -3' miRNA: 3'- -CGCG-GCUCCGacucCGGUAGuaGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 13052 | 0.7 | 0.280732 |
Target: 5'- cGCGCCGAguccgagGGCUGgggcaAGGCCAcCggCGCg -3' miRNA: 3'- -CGCGGCU-------CCGAC-----UCCGGUaGuaGCGg -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 35200 | 0.7 | 0.256897 |
Target: 5'- uCGCCGAGGgUGAGcgcggcgcagaugcuGCCGUggaCAUCGCg -3' miRNA: 3'- cGCGGCUCCgACUC---------------CGGUA---GUAGCGg -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 16646 | 0.75 | 0.113198 |
Target: 5'- cGCGCCGcGcGCaucGcGGCCAUCGUUGCCg -3' miRNA: 3'- -CGCGGCuC-CGa--CuCCGGUAGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 14085 | 0.69 | 0.302533 |
Target: 5'- cGCGCugcccgaCGAGGCcaAGGCCAUCGaguccgaCGCCg -3' miRNA: 3'- -CGCG-------GCUCCGacUCCGGUAGUa------GCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 13129 | 0.73 | 0.175861 |
Target: 5'- aGUGCUG-GGCaaGGGCCAgcaguUCGUCGCCu -3' miRNA: 3'- -CGCGGCuCCGacUCCGGU-----AGUAGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 34474 | 0.71 | 0.229313 |
Target: 5'- cGCGCCGAGGCcacGGGcaaGCUGUCGgaaauccucgCGCCg -3' miRNA: 3'- -CGCGGCUCCGa--CUC---CGGUAGUa---------GCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 33577 | 0.69 | 0.318555 |
Target: 5'- gGCGaCCGAGGCcaacgcgcuGGCCcgCGUUGCg -3' miRNA: 3'- -CGC-GGCUCCGacu------CCGGuaGUAGCGg -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 27491 | 0.68 | 0.354164 |
Target: 5'- uCGCCGAguugggcgcgcagucGGCacuUGAGGCCGgccagCAgcagaUCGCCg -3' miRNA: 3'- cGCGGCU---------------CCG---ACUCCGGUa----GU-----AGCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 12449 | 0.73 | 0.180663 |
Target: 5'- cCGuUCGAcGGCUGcauccAGGCCGUCGUgCGCCg -3' miRNA: 3'- cGC-GGCU-CCGAC-----UCCGGUAGUA-GCGG- -5' |
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26621 | 5' | -58.6 | NC_005357.1 | + | 19212 | 0.72 | 0.206447 |
Target: 5'- -gGCCGAGGCcGAGGCCGaauUCAccgacgagGCCg -3' miRNA: 3'- cgCGGCUCCGaCUCCGGU---AGUag------CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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