miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26621 5' -58.6 NC_005357.1 + 42212 0.67 0.394296
Target:  5'- aUGCCGAGGUgc--GCCAgu-UCGCCg -3'
miRNA:   3'- cGCGGCUCCGacucCGGUaguAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 41810 1.14 0.000144
Target:  5'- cGCGCCGAGGCUGAGGCCAUCAUCGCCg -3'
miRNA:   3'- -CGCGGCUCCGACUCCGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 41610 0.7 0.260862
Target:  5'- -gGCCGAcguucggcaagGGCUG-GGCgCGgcgCGUCGCCg -3'
miRNA:   3'- cgCGGCU-----------CCGACuCCG-GUa--GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 40670 0.67 0.385324
Target:  5'- cGCGCC-AGGCgcaGGccGGCCAUgAcCGCCc -3'
miRNA:   3'- -CGCGGcUCCGa--CU--CCGGUAgUaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 40397 0.66 0.480757
Target:  5'- uCGCCGAGGC---GGCCggUAU-GCCg -3'
miRNA:   3'- cGCGGCUCCGacuCCGGuaGUAgCGG- -5'
26621 5' -58.6 NC_005357.1 + 38726 0.69 0.303282
Target:  5'- uGCGCCGca--UGGGGCagcgCGUCGCCg -3'
miRNA:   3'- -CGCGGCuccgACUCCGgua-GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 38170 0.66 0.490937
Target:  5'- aUGCCGGcGCUGAcGGCCggCAccgacuaCGCCa -3'
miRNA:   3'- cGCGGCUcCGACU-CCGGuaGUa------GCGG- -5'
26621 5' -58.6 NC_005357.1 + 37832 0.68 0.367791
Target:  5'- uCGCCGAGGCcGA-GCaguUCcUCGCCu -3'
miRNA:   3'- cGCGGCUCCGaCUcCGgu-AGuAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 37519 0.71 0.217623
Target:  5'- cGCuGCCGAcguuuccaccguGGCcgaaaacGAGGCCGcCGUCGCCg -3'
miRNA:   3'- -CG-CGGCU------------CCGa------CUCCGGUaGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 37500 0.66 0.480757
Target:  5'- gGCGcCCGAGGgcaaGAaGCUgGUCGUCGCCg -3'
miRNA:   3'- -CGC-GGCUCCga--CUcCGG-UAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 36096 0.7 0.267582
Target:  5'- gGCGCUuuGGCUGGGGCgGaacgCGCCg -3'
miRNA:   3'- -CGCGGcuCCGACUCCGgUaguaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 35640 0.68 0.376489
Target:  5'- uGCGCaagucaaGGcGCUGAaccaGGCCAUCgagcagGUCGCCa -3'
miRNA:   3'- -CGCGg------CUcCGACU----CCGGUAG------UAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 35625 0.66 0.441119
Target:  5'- cGCGCCGugucccuGGCUGAccaGGCgGUCAUagauucCCa -3'
miRNA:   3'- -CGCGGCu------CCGACU---CCGgUAGUAgc----GG- -5'
26621 5' -58.6 NC_005357.1 + 35567 0.71 0.22812
Target:  5'- cGUGCCGAcguGGUggGGGGCCuacgaaaaggcCGUCGCCg -3'
miRNA:   3'- -CGCGGCU---CCGa-CUCCGGua---------GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 35348 0.66 0.47068
Target:  5'- cGCGCCGuGGGU--AGGCCG-CggCGUCa -3'
miRNA:   3'- -CGCGGC-UCCGacUCCGGUaGuaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 35200 0.7 0.256897
Target:  5'- uCGCCGAGGgUGAGcgcggcgcagaugcuGCCGUggaCAUCGCg -3'
miRNA:   3'- cGCGGCUCCgACUC---------------CGGUA---GUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 35161 0.69 0.303282
Target:  5'- cCGCCGAGaaGCUGcacaAGGCCGgcgaCAUCgGCCc -3'
miRNA:   3'- cGCGGCUC--CGAC----UCCGGUa---GUAG-CGG- -5'
26621 5' -58.6 NC_005357.1 + 35080 0.81 0.045288
Target:  5'- aCGCCGAGGUcGAGGCCGcgcUCAagGCCa -3'
miRNA:   3'- cGCGGCUCCGaCUCCGGU---AGUagCGG- -5'
26621 5' -58.6 NC_005357.1 + 35000 0.67 0.41264
Target:  5'- -aGCCGAacuGCUGGccGGCCAUCcggUGCCc -3'
miRNA:   3'- cgCGGCUc--CGACU--CCGGUAGua-GCGG- -5'
26621 5' -58.6 NC_005357.1 + 34474 0.71 0.229313
Target:  5'- cGCGCCGAGGCcacGGGcaaGCUGUCGgaaauccucgCGCCg -3'
miRNA:   3'- -CGCGGCUCCGa--CUC---CGGUAGUa---------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.