Results 41 - 60 of 82 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 37832 | 0.68 | 0.367791 |
Target: 5'- uCGCCGAGGCcGA-GCaguUCcUCGCCu -3' miRNA: 3'- cGCGGCUCCGaCUcCGgu-AGuAGCGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 12304 | 0.68 | 0.359232 |
Target: 5'- -gGCCGGcGGCgUGuucuggcgcGGCC-UCAUCGCCu -3' miRNA: 3'- cgCGGCU-CCG-ACu--------CCGGuAGUAGCGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 27491 | 0.68 | 0.354164 |
Target: 5'- uCGCCGAguugggcgcgcagucGGCacuUGAGGCCGgccagCAgcagaUCGCCg -3' miRNA: 3'- cGCGGCU---------------CCG---ACUCCGGUa----GU-----AGCGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 14860 | 0.68 | 0.350813 |
Target: 5'- aGCGCCGcacGCUGGGcGCCuuuaaGUUGCCc -3' miRNA: 3'- -CGCGGCuc-CGACUC-CGGuag--UAGCGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 18268 | 0.68 | 0.3344 |
Target: 5'- uGCGCCGAGaacUUGccGGCCGUCAgcggGCCg -3' miRNA: 3'- -CGCGGCUCc--GACu-CCGGUAGUag--CGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 20959 | 0.69 | 0.326406 |
Target: 5'- aGCGCau-GGUcGAGGCCAaCAUCcuGCCg -3' miRNA: 3'- -CGCGgcuCCGaCUCCGGUaGUAG--CGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 11843 | 0.69 | 0.324036 |
Target: 5'- cGCGCCGcGGUUGGccugggcgaaccccGcGCCAaUAUCGCCc -3' miRNA: 3'- -CGCGGCuCCGACU--------------C-CGGUaGUAGCGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 33577 | 0.69 | 0.318555 |
Target: 5'- gGCGaCCGAGGCcaacgcgcuGGCCcgCGUUGCg -3' miRNA: 3'- -CGC-GGCUCCGacu------CCGGuaGUAGCGg -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 26171 | 0.69 | 0.318555 |
Target: 5'- cGCGCgCGAGGCcaacGCCAUC--CGCCa -3' miRNA: 3'- -CGCG-GCUCCGacucCGGUAGuaGCGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 15871 | 0.69 | 0.310085 |
Target: 5'- cGCGCCGAucuguugcucgGGCacguaggUGAGGCCcagCAgcUUGCCg -3' miRNA: 3'- -CGCGGCU-----------CCG-------ACUCCGGua-GU--AGCGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 23948 | 0.69 | 0.303282 |
Target: 5'- gGCGCCGcccGGC-GAGGUCggCAuUUGCCg -3' miRNA: 3'- -CGCGGCu--CCGaCUCCGGuaGU-AGCGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 23545 | 0.69 | 0.303282 |
Target: 5'- cGCgGUCGAuGGCcucGGCCGaCAUCGCCg -3' miRNA: 3'- -CG-CGGCU-CCGacuCCGGUaGUAGCGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 35161 | 0.69 | 0.303282 |
Target: 5'- cCGCCGAGaaGCUGcacaAGGCCGgcgaCAUCgGCCc -3' miRNA: 3'- cGCGGCUC--CGAC----UCCGGUa---GUAG-CGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 38726 | 0.69 | 0.303282 |
Target: 5'- uGCGCCGca--UGGGGCagcgCGUCGCCg -3' miRNA: 3'- -CGCGGCuccgACUCCGgua-GUAGCGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 10065 | 0.69 | 0.303282 |
Target: 5'- aGCGuCCGAGGCgucgucGGGGCgAgCcgUGCCa -3' miRNA: 3'- -CGC-GGCUCCGa-----CUCCGgUaGuaGCGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 4197 | 0.69 | 0.303282 |
Target: 5'- gGCGCCGAaaaguuggaaucGGCgcgcaccGuGCCAUCGUCGCa -3' miRNA: 3'- -CGCGGCU------------CCGacu----C-CGGUAGUAGCGg -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 14085 | 0.69 | 0.302533 |
Target: 5'- cGCGCugcccgaCGAGGCcaAGGCCAUCGaguccgaCGCCg -3' miRNA: 3'- -CGCG-------GCUCCGacUCCGGUAGUa------GCGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 13502 | 0.69 | 0.295859 |
Target: 5'- cGCGCCuuuGGGC-GAGguaagcgguuuGCCGUCcgCGCCg -3' miRNA: 3'- -CGCGGc--UCCGaCUC-----------CGGUAGuaGCGG- -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 13052 | 0.7 | 0.280732 |
Target: 5'- cGCGCCGAguccgagGGCUGgggcaAGGCCAcCggCGCg -3' miRNA: 3'- -CGCGGCU-------CCGAC-----UCCGGUaGuaGCGg -5' |
|||||||
26621 | 5' | -58.6 | NC_005357.1 | + | 4528 | 0.7 | 0.279324 |
Target: 5'- aGCGCaucgcaGAccacgaaggucuugGGCuUGAGGCCGaaGUCGCCg -3' miRNA: 3'- -CGCGg-----CU--------------CCG-ACUCCGGUagUAGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home