miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26621 5' -58.6 NC_005357.1 + 27965 0.66 0.441119
Target:  5'- gGCGagcaCGuccucgguGGGCUG-GGCCAUCAggcuguaGCCg -3'
miRNA:   3'- -CGCg---GC--------UCCGACuCCGGUAGUag-----CGG- -5'
26621 5' -58.6 NC_005357.1 + 31992 0.67 0.435333
Target:  5'- gGCGCCauugccaagcuguugGAaaugaaaaguGGC-GAGGCCAUCGgcgCGCUg -3'
miRNA:   3'- -CGCGG---------------CU----------CCGaCUCCGGUAGUa--GCGG- -5'
26621 5' -58.6 NC_005357.1 + 16274 0.67 0.431501
Target:  5'- cGCGCgCGgccacccggaAGGCUacccGGUCGUCGUCGCg -3'
miRNA:   3'- -CGCG-GC----------UCCGAcu--CCGGUAGUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 24051 0.67 0.431501
Target:  5'- gGCGCCaucGGCa-AGGCCAaCcUCGCCg -3'
miRNA:   3'- -CGCGGcu-CCGacUCCGGUaGuAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 4823 0.67 0.431501
Target:  5'- -gGUCGGGGCcGGcGCCGUCGUCGa- -3'
miRNA:   3'- cgCGGCUCCGaCUcCGGUAGUAGCgg -5'
26621 5' -58.6 NC_005357.1 + 32369 0.67 0.422007
Target:  5'- cCGCCGAGGCcccGGCCGcccagCAggaaGCCa -3'
miRNA:   3'- cGCGGCUCCGacuCCGGUa----GUag--CGG- -5'
26621 5' -58.6 NC_005357.1 + 35000 0.67 0.41264
Target:  5'- -aGCCGAacuGCUGGccGGCCAUCcggUGCCc -3'
miRNA:   3'- cgCGGCUc--CGACU--CCGGUAGua-GCGG- -5'
26621 5' -58.6 NC_005357.1 + 8639 0.67 0.41264
Target:  5'- gGUGgCGAGGUcgccGGCCuUCAUCGCg -3'
miRNA:   3'- -CGCgGCUCCGacu-CCGGuAGUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 18468 0.67 0.41264
Target:  5'- gGCGCCGGcGGCgucGGCCGauUCGUCcaCCg -3'
miRNA:   3'- -CGCGGCU-CCGacuCCGGU--AGUAGc-GG- -5'
26621 5' -58.6 NC_005357.1 + 14989 0.67 0.41264
Target:  5'- aGCGCCaGGGcCUGcGGCCGccgggcgCGgugCGCCa -3'
miRNA:   3'- -CGCGGcUCC-GACuCCGGUa------GUa--GCGG- -5'
26621 5' -58.6 NC_005357.1 + 2444 0.67 0.41264
Target:  5'- gGCGCCGAaaCUGcGGCCcaggCGcUCGCCu -3'
miRNA:   3'- -CGCGGCUccGACuCCGGua--GU-AGCGG- -5'
26621 5' -58.6 NC_005357.1 + 18396 0.67 0.394296
Target:  5'- gGCGCCGGuGGC---GGCCA-CGUCGgCg -3'
miRNA:   3'- -CGCGGCU-CCGacuCCGGUaGUAGCgG- -5'
26621 5' -58.6 NC_005357.1 + 42212 0.67 0.394296
Target:  5'- aUGCCGAGGUgc--GCCAgu-UCGCCg -3'
miRNA:   3'- cGCGGCUCCGacucCGGUaguAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 40670 0.67 0.385324
Target:  5'- cGCGCC-AGGCgcaGGccGGCCAUgAcCGCCc -3'
miRNA:   3'- -CGCGGcUCCGa--CU--CCGGUAgUaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 13023 0.67 0.385324
Target:  5'- aGCGCaGuGGC-GAcGGCCucGUCAUCGCg -3'
miRNA:   3'- -CGCGgCuCCGaCU-CCGG--UAGUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 18279 0.68 0.376489
Target:  5'- cCGUCGAGGCgcuGGGCCAggcgCGCa -3'
miRNA:   3'- cGCGGCUCCGac-UCCGGUaguaGCGg -5'
26621 5' -58.6 NC_005357.1 + 15468 0.68 0.376489
Target:  5'- -gGCCGAaGCUGccGuCCAguugCAUCGCCa -3'
miRNA:   3'- cgCGGCUcCGACucC-GGUa---GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 28724 0.68 0.376489
Target:  5'- gGCGCacgCGAGGaUGAGcGCCuuggCAUCGUCc -3'
miRNA:   3'- -CGCG---GCUCCgACUC-CGGua--GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 32468 0.68 0.376489
Target:  5'- cUGCCGAGGUgGGGGCgGcCGaugCGCCc -3'
miRNA:   3'- cGCGGCUCCGaCUCCGgUaGUa--GCGG- -5'
26621 5' -58.6 NC_005357.1 + 35640 0.68 0.376489
Target:  5'- uGCGCaagucaaGGcGCUGAaccaGGCCAUCgagcagGUCGCCa -3'
miRNA:   3'- -CGCGg------CUcCGACU----CCGGUAG------UAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.