miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26622 5' -59.5 NC_005357.1 + 42040 1.09 0.000291
Target:  5'- aGUCGCGCGCUGGCCGCGCUCAAUCGGc -3'
miRNA:   3'- -CAGCGCGCGACCGGCGCGAGUUAGCC- -5'
26622 5' -59.5 NC_005357.1 + 41979 0.66 0.420711
Target:  5'- -cCGCaaGCUGGCCGCGCagCAGc--- -3'
miRNA:   3'- caGCGcgCGACCGGCGCGa-GUUagcc -5'
26622 5' -59.5 NC_005357.1 + 41048 0.66 0.411426
Target:  5'- cGUUGUGCGCgUGGCCGCGgCgcccuauGUCa- -3'
miRNA:   3'- -CAGCGCGCG-ACCGGCGC-Gagu----UAGcc -5'
26622 5' -59.5 NC_005357.1 + 39696 0.75 0.107708
Target:  5'- --aGCaGCGCcgGGCCGCGCUCAAgcgucCGGc -3'
miRNA:   3'- cagCG-CGCGa-CCGGCGCGAGUUa----GCC- -5'
26622 5' -59.5 NC_005357.1 + 36330 0.71 0.20679
Target:  5'- cGUUGCgacauGCGCaaGGCCGCGCUCGA-CGa -3'
miRNA:   3'- -CAGCG-----CGCGa-CCGGCGCGAGUUaGCc -5'
26622 5' -59.5 NC_005357.1 + 35334 0.66 0.402268
Target:  5'- aUCGUGCGCgUGGgCGCGC-CG--UGGg -3'
miRNA:   3'- cAGCGCGCG-ACCgGCGCGaGUuaGCC- -5'
26622 5' -59.5 NC_005357.1 + 34055 0.66 0.420711
Target:  5'- --aGCGCGa-GGCCGgGUUCGAgcCGGa -3'
miRNA:   3'- cagCGCGCgaCCGGCgCGAGUUa-GCC- -5'
26622 5' -59.5 NC_005357.1 + 33060 0.72 0.176356
Target:  5'- uGUCGUGCGCUucaucgGGUCGCGCagCGAcgCGGc -3'
miRNA:   3'- -CAGCGCGCGA------CCGGCGCGa-GUUa-GCC- -5'
26622 5' -59.5 NC_005357.1 + 32646 0.72 0.181136
Target:  5'- -gUGCGCGacCUGGCCGCGUggaaCGAUCuGGa -3'
miRNA:   3'- caGCGCGC--GACCGGCGCGa---GUUAG-CC- -5'
26622 5' -59.5 NC_005357.1 + 30264 0.71 0.191041
Target:  5'- --aGCuGCGCUGGUCGCGCgagUCGccggaaaacGUCGGg -3'
miRNA:   3'- cagCG-CGCGACCGGCGCG---AGU---------UAGCC- -5'
26622 5' -59.5 NC_005357.1 + 29625 0.72 0.181136
Target:  5'- -cCGgGCGCuugUGGCCGgGCUUGAUgGGg -3'
miRNA:   3'- caGCgCGCG---ACCGGCgCGAGUUAgCC- -5'
26622 5' -59.5 NC_005357.1 + 29574 0.68 0.333848
Target:  5'- aUCGCGUcagGUcGGCCGCGCcCAGgcgcgCGGu -3'
miRNA:   3'- cAGCGCG---CGaCCGGCGCGaGUUa----GCC- -5'
26622 5' -59.5 NC_005357.1 + 29129 0.66 0.439656
Target:  5'- -aCGCGCGCgaGGCCGCauucCUCugccAUCGc -3'
miRNA:   3'- caGCGCGCGa-CCGGCGc---GAGu---UAGCc -5'
26622 5' -59.5 NC_005357.1 + 28282 0.69 0.291257
Target:  5'- -cCGCGCGCUGGgacacggcgcagaacUugaagaacucggCGCGCUCGgcGUCGGa -3'
miRNA:   3'- caGCGCGCGACC---------------G------------GCGCGAGU--UAGCC- -5'
26622 5' -59.5 NC_005357.1 + 27825 0.66 0.433921
Target:  5'- -gCGCGCGCUgcccgcgguggcgccGGCCGCGCcgcugcUCAAgaaCGu -3'
miRNA:   3'- caGCGCGCGA---------------CCGGCGCG------AGUUa--GCc -5'
26622 5' -59.5 NC_005357.1 + 27416 0.73 0.149971
Target:  5'- cGUCGCGCGcCUGGCgcacCGCGCcCGG-CGGc -3'
miRNA:   3'- -CAGCGCGC-GACCG----GCGCGaGUUaGCC- -5'
26622 5' -59.5 NC_005357.1 + 26340 0.71 0.212284
Target:  5'- -cCGCGaaCUGGCCGCGCcgcUCGuAUCGGc -3'
miRNA:   3'- caGCGCgcGACCGGCGCG---AGU-UAGCC- -5'
26622 5' -59.5 NC_005357.1 + 26049 0.66 0.430122
Target:  5'- -cCGCGCgGCgGGCgcgcuccaUGCGCUCGGcgaacUCGGg -3'
miRNA:   3'- caGCGCG-CGaCCG--------GCGCGAGUU-----AGCC- -5'
26622 5' -59.5 NC_005357.1 + 25794 0.68 0.341917
Target:  5'- -aUGCGCGC-GG-CGCGCUCGguAUCGu -3'
miRNA:   3'- caGCGCGCGaCCgGCGCGAGU--UAGCc -5'
26622 5' -59.5 NC_005357.1 + 25301 0.68 0.325919
Target:  5'- gGUCGUGCgGCcGGCCcugccaccgGCGCUCGucgcCGGg -3'
miRNA:   3'- -CAGCGCG-CGaCCGG---------CGCGAGUua--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.