miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26622 5' -59.5 NC_005357.1 + 8225 0.74 0.127225
Target:  5'- uUCGUGCGC-GGCCGUGCcCucGUCGGc -3'
miRNA:   3'- cAGCGCGCGaCCGGCGCGaGu-UAGCC- -5'
26622 5' -59.5 NC_005357.1 + 18280 0.66 0.402268
Target:  5'- cGUCGagGCGCUgGGCCagGCGCgCAGcCGGc -3'
miRNA:   3'- -CAGCg-CGCGA-CCGG--CGCGaGUUaGCC- -5'
26622 5' -59.5 NC_005357.1 + 17989 0.67 0.3493
Target:  5'- uGUCGC-CGa-GGCCGCGCgcggCAccgacaaAUCGGg -3'
miRNA:   3'- -CAGCGcGCgaCCGGCGCGa---GU-------UAGCC- -5'
26622 5' -59.5 NC_005357.1 + 19590 0.69 0.288383
Target:  5'- -gCGCGCGCUgucggcugucGGCaGCGCggcgaAGUCGGg -3'
miRNA:   3'- caGCGCGCGA----------CCGgCGCGag---UUAGCC- -5'
26622 5' -59.5 NC_005357.1 + 21259 0.7 0.23492
Target:  5'- -cCGCGCaGCaGGCCGCGCUguugaacCAGggcgCGGa -3'
miRNA:   3'- caGCGCG-CGaCCGGCGCGA-------GUUa---GCC- -5'
26622 5' -59.5 NC_005357.1 + 7535 0.71 0.19617
Target:  5'- -cCGUGCGCUcGGCggCGUGCUCGAUCc- -3'
miRNA:   3'- caGCGCGCGA-CCG--GCGCGAGUUAGcc -5'
26622 5' -59.5 NC_005357.1 + 2587 0.66 0.439656
Target:  5'- -gCGCGCGCUuGCCGCccuGUUgCAAcCGGa -3'
miRNA:   3'- caGCGCGCGAcCGGCG---CGA-GUUaGCC- -5'
26622 5' -59.5 NC_005357.1 + 995 0.66 0.430122
Target:  5'- cGUCGCcCGCUGcCCGCGC-CAcuggcCGGg -3'
miRNA:   3'- -CAGCGcGCGACcGGCGCGaGUua---GCC- -5'
26622 5' -59.5 NC_005357.1 + 1880 0.66 0.411426
Target:  5'- cGUgGCcgGCGCUGGCCGgGUgggCGAacagcagCGGg -3'
miRNA:   3'- -CAgCG--CGCGACCGGCgCGa--GUUa------GCC- -5'
26622 5' -59.5 NC_005357.1 + 8996 0.66 0.402268
Target:  5'- uUCGCcaGCGgUGGCCGUGCcgCGAUagccagCGGu -3'
miRNA:   3'- cAGCG--CGCgACCGGCGCGa-GUUA------GCC- -5'
26622 5' -59.5 NC_005357.1 + 14973 0.69 0.274348
Target:  5'- --gGCGCGCUGGCauaccaGCGC-CAGggccugCGGc -3'
miRNA:   3'- cagCGCGCGACCGg-----CGCGaGUUa-----GCC- -5'
26622 5' -59.5 NC_005357.1 + 13624 0.73 0.138169
Target:  5'- --gGCGCGCUGGCUGCuCaaGAUCGGc -3'
miRNA:   3'- cagCGCGCGACCGGCGcGagUUAGCC- -5'
26622 5' -59.5 NC_005357.1 + 34055 0.66 0.420711
Target:  5'- --aGCGCGa-GGCCGgGUUCGAgcCGGa -3'
miRNA:   3'- cagCGCGCgaCCGGCgCGAGUUa-GCC- -5'
26622 5' -59.5 NC_005357.1 + 32646 0.72 0.181136
Target:  5'- -gUGCGCGacCUGGCCGCGUggaaCGAUCuGGa -3'
miRNA:   3'- caGCGCGC--GACCGGCGCGa---GUUAG-CC- -5'
26622 5' -59.5 NC_005357.1 + 11389 0.67 0.358475
Target:  5'- uUCGCGCacGUUGGcCCGCGCgauugccUCGGc -3'
miRNA:   3'- cAGCGCG--CGACC-GGCGCGaguu---AGCC- -5'
26622 5' -59.5 NC_005357.1 + 41979 0.66 0.420711
Target:  5'- -cCGCaaGCUGGCCGCGCagCAGc--- -3'
miRNA:   3'- caGCGcgCGACCGGCGCGa-GUUagcc -5'
26622 5' -59.5 NC_005357.1 + 4397 0.66 0.439656
Target:  5'- cGUCGCGC-CgGGCCuugaGCGUgcggCAGUCGu -3'
miRNA:   3'- -CAGCGCGcGaCCGG----CGCGa---GUUAGCc -5'
26622 5' -59.5 NC_005357.1 + 19903 0.72 0.186031
Target:  5'- -gCGCGCGCU-GCgCGUGCUCGcugCGGg -3'
miRNA:   3'- caGCGCGCGAcCG-GCGCGAGUua-GCC- -5'
26622 5' -59.5 NC_005357.1 + 35334 0.66 0.402268
Target:  5'- aUCGUGCGCgUGGgCGCGC-CG--UGGg -3'
miRNA:   3'- cAGCGCGCG-ACCgGCGCGaGUuaGCC- -5'
26622 5' -59.5 NC_005357.1 + 36330 0.71 0.20679
Target:  5'- cGUUGCgacauGCGCaaGGCCGCGCUCGA-CGa -3'
miRNA:   3'- -CAGCG-----CGCGa-CCGGCGCGAGUUaGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.