miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26622 5' -59.5 NC_005357.1 + 10736 0.67 0.375587
Target:  5'- cGUCGCcuuGCuGCUcgccaaGGgCGCGCUCGAcuUCGGc -3'
miRNA:   3'- -CAGCG---CG-CGA------CCgGCGCGAGUU--AGCC- -5'
26622 5' -59.5 NC_005357.1 + 11389 0.67 0.358475
Target:  5'- uUCGCGCacGUUGGcCCGCGCgauugccUCGGc -3'
miRNA:   3'- cAGCGCG--CGACC-GGCGCGaguu---AGCC- -5'
26622 5' -59.5 NC_005357.1 + 17989 0.67 0.3493
Target:  5'- uGUCGC-CGa-GGCCGCGCgcggCAccgacaaAUCGGg -3'
miRNA:   3'- -CAGCGcGCgaCCGGCGCGa---GU-------UAGCC- -5'
26622 5' -59.5 NC_005357.1 + 25794 0.68 0.341917
Target:  5'- -aUGCGCGC-GG-CGCGCUCGguAUCGu -3'
miRNA:   3'- caGCGCGCGaCCgGCGCGAGU--UAGCc -5'
26622 5' -59.5 NC_005357.1 + 29574 0.68 0.333848
Target:  5'- aUCGCGUcagGUcGGCCGCGCcCAGgcgcgCGGu -3'
miRNA:   3'- cAGCGCG---CGaCCGGCGCGaGUUa----GCC- -5'
26622 5' -59.5 NC_005357.1 + 25301 0.68 0.325919
Target:  5'- gGUCGUGCgGCcGGCCcugccaccgGCGCUCGucgcCGGg -3'
miRNA:   3'- -CAGCGCG-CGaCCGG---------CGCGAGUua--GCC- -5'
26622 5' -59.5 NC_005357.1 + 2245 0.68 0.323568
Target:  5'- --gGCGCG-UGGCCGCGCaaugaaucuucuugUCGAUCa- -3'
miRNA:   3'- cagCGCGCgACCGGCGCG--------------AGUUAGcc -5'
26622 5' -59.5 NC_005357.1 + 22057 0.68 0.302976
Target:  5'- cGUCGCGCuuGCUcgGGUCGCGgUCGGcgcgCGGc -3'
miRNA:   3'- -CAGCGCG--CGA--CCGGCGCgAGUUa---GCC- -5'
26622 5' -59.5 NC_005357.1 + 2546 0.69 0.295609
Target:  5'- uUCGCG-GUaggGGCCGCGCUCGuaauugcCGGc -3'
miRNA:   3'- cAGCGCgCGa--CCGGCGCGAGUua-----GCC- -5'
26622 5' -59.5 NC_005357.1 + 28282 0.69 0.291257
Target:  5'- -cCGCGCGCUGGgacacggcgcagaacUugaagaacucggCGCGCUCGgcGUCGGa -3'
miRNA:   3'- caGCGCGCGACC---------------G------------GCGCGAGU--UAGCC- -5'
26622 5' -59.5 NC_005357.1 + 19590 0.69 0.288383
Target:  5'- -gCGCGCGCUgucggcugucGGCaGCGCggcgaAGUCGGg -3'
miRNA:   3'- caGCGCGCGA----------CCGgCGCGag---UUAGCC- -5'
26622 5' -59.5 NC_005357.1 + 16812 0.69 0.281296
Target:  5'- gGUCGCGCcCaGGCgGCGCaguUCAcgCGGc -3'
miRNA:   3'- -CAGCGCGcGaCCGgCGCG---AGUuaGCC- -5'
26622 5' -59.5 NC_005357.1 + 14973 0.69 0.274348
Target:  5'- --gGCGCGCUGGCauaccaGCGC-CAGggccugCGGc -3'
miRNA:   3'- cagCGCGCGACCGg-----CGCGaGUUa-----GCC- -5'
26622 5' -59.5 NC_005357.1 + 1081 0.69 0.267538
Target:  5'- -aCGCGCGCgguagauugccuUGGCCGUG-UCGcgCGGc -3'
miRNA:   3'- caGCGCGCG------------ACCGGCGCgAGUuaGCC- -5'
26622 5' -59.5 NC_005357.1 + 7544 0.7 0.247928
Target:  5'- -cCGCaCGCUGGCuCGCGgccgggucguaCUUAAUCGGa -3'
miRNA:   3'- caGCGcGCGACCG-GCGC-----------GAGUUAGCC- -5'
26622 5' -59.5 NC_005357.1 + 24146 0.7 0.235526
Target:  5'- -cUGCGCGcCUGGCCcaGCGcCUCGA-CGGc -3'
miRNA:   3'- caGCGCGC-GACCGG--CGC-GAGUUaGCC- -5'
26622 5' -59.5 NC_005357.1 + 21259 0.7 0.23492
Target:  5'- -cCGCGCaGCaGGCCGCGCUguugaacCAGggcgCGGa -3'
miRNA:   3'- caGCGCG-CGaCCGGCGCGA-------GUUa---GCC- -5'
26622 5' -59.5 NC_005357.1 + 26340 0.71 0.212284
Target:  5'- -cCGCGaaCUGGCCGCGCcgcUCGuAUCGGc -3'
miRNA:   3'- caGCGCgcGACCGGCGCG---AGU-UAGCC- -5'
26622 5' -59.5 NC_005357.1 + 36330 0.71 0.20679
Target:  5'- cGUUGCgacauGCGCaaGGCCGCGCUCGA-CGa -3'
miRNA:   3'- -CAGCG-----CGCGa-CCGGCGCGAGUUaGCc -5'
26622 5' -59.5 NC_005357.1 + 7535 0.71 0.19617
Target:  5'- -cCGUGCGCUcGGCggCGUGCUCGAUCc- -3'
miRNA:   3'- caGCGCGCGA-CCG--GCGCGAGUUAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.