miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26623 3' -52.4 NC_005357.1 + 36032 0.7 0.522618
Target:  5'- cGCGACuacaccggGcCGGCcgGCCUGCGCCu- -3'
miRNA:   3'- aUGUUGua------C-GCCGuaUGGAUGCGGug -5'
26623 3' -52.4 NC_005357.1 + 29227 0.7 0.533863
Target:  5'- aAgAACAUGCaGGCGUACa-ACGCCGg -3'
miRNA:   3'- aUgUUGUACG-CCGUAUGgaUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 39842 0.69 0.545192
Target:  5'- uUGCAACAggGCGGCAaGCgcGCGCaCGCg -3'
miRNA:   3'- -AUGUUGUa-CGCCGUaUGgaUGCG-GUG- -5'
26623 3' -52.4 NC_005357.1 + 20736 0.69 0.556598
Target:  5'- -cCGACAUGCugcuGGCGccguagagGCgCUGCGCCGCg -3'
miRNA:   3'- auGUUGUACG----CCGUa-------UG-GAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 31626 0.69 0.565772
Target:  5'- cGCAGCGUGgcagggccucaaGGCAUACCgu-GCCGCu -3'
miRNA:   3'- aUGUUGUACg-----------CCGUAUGGaugCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 7764 0.69 0.568072
Target:  5'- uUGCAGCAc-CGGCGcgAUCUGCGCCGg -3'
miRNA:   3'- -AUGUUGUacGCCGUa-UGGAUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 8000 0.69 0.579604
Target:  5'- cACGGCGU-CGGaCGUGCCcuugGCGCCAg -3'
miRNA:   3'- aUGUUGUAcGCC-GUAUGGa---UGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 8339 0.68 0.602805
Target:  5'- uUGC-GCGUGCGuGCucaugccaGUACCUccuGCGCCGCc -3'
miRNA:   3'- -AUGuUGUACGC-CG--------UAUGGA---UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 32900 0.68 0.602805
Target:  5'- gACAACAagaacUGCGGCcacgGCCUGCacgGCUGCu -3'
miRNA:   3'- aUGUUGU-----ACGCCGua--UGGAUG---CGGUG- -5'
26623 3' -52.4 NC_005357.1 + 37074 0.68 0.614453
Target:  5'- cGCGguGCAgGCGGCcacgcagcgcgAUGCCaugcUGCGCCACg -3'
miRNA:   3'- aUGU--UGUaCGCCG-----------UAUGG----AUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 37170 0.68 0.626119
Target:  5'- -uCAACAcgGUGGCcgGUGCCaACGCCAa -3'
miRNA:   3'- auGUUGUa-CGCCG--UAUGGaUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 27579 0.68 0.63779
Target:  5'- -cCAGCGUGCGGC--GCUggcCGCCAa -3'
miRNA:   3'- auGUUGUACGCCGuaUGGau-GCGGUg -5'
26623 3' -52.4 NC_005357.1 + 17638 0.68 0.63779
Target:  5'- cGCAuCGUGCGGCAg---UACGgCCACg -3'
miRNA:   3'- aUGUuGUACGCCGUauggAUGC-GGUG- -5'
26623 3' -52.4 NC_005357.1 + 11130 0.68 0.63779
Target:  5'- --aAACGUGCGaGCAguucgGCCUGCugcuggGCCGCc -3'
miRNA:   3'- augUUGUACGC-CGUa----UGGAUG------CGGUG- -5'
26623 3' -52.4 NC_005357.1 + 14349 0.68 0.63779
Target:  5'- aUACGACGccGCGGCc-ACCUGC-CCGCu -3'
miRNA:   3'- -AUGUUGUa-CGCCGuaUGGAUGcGGUG- -5'
26623 3' -52.4 NC_005357.1 + 210 0.68 0.649456
Target:  5'- aGCAuCAUgGUGGCGUAggUAUGCCGCa -3'
miRNA:   3'- aUGUuGUA-CGCCGUAUggAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 30081 0.67 0.661104
Target:  5'- -----uGUGCGGC--GCCcggGCGCCACg -3'
miRNA:   3'- auguugUACGCCGuaUGGa--UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 36531 0.67 0.661104
Target:  5'- gGCGGCAcacucaccacGCuGGCG-ACCUAUGCCACu -3'
miRNA:   3'- aUGUUGUa---------CG-CCGUaUGGAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 21453 0.67 0.672721
Target:  5'- cUGCGGCGgggGCGGCAggauguugGCCU-CGaCCAUg -3'
miRNA:   3'- -AUGUUGUa--CGCCGUa-------UGGAuGC-GGUG- -5'
26623 3' -52.4 NC_005357.1 + 21993 0.67 0.672721
Target:  5'- cGCAGCGUGCGGguU-UCgucgGCGCCu- -3'
miRNA:   3'- aUGUUGUACGCCguAuGGa---UGCGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.