miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26623 3' -52.4 NC_005357.1 + 11130 0.68 0.63779
Target:  5'- --aAACGUGCGaGCAguucgGCCUGCugcuggGCCGCc -3'
miRNA:   3'- augUUGUACGC-CGUa----UGGAUG------CGGUG- -5'
26623 3' -52.4 NC_005357.1 + 11198 0.66 0.74106
Target:  5'- --gAugGUGCGGUcaAUGCCgcgcaugacCGCCACg -3'
miRNA:   3'- augUugUACGCCG--UAUGGau-------GCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 12067 0.67 0.684296
Target:  5'- cUACAGCA-GCGGCGgguUCUcGCGCgACg -3'
miRNA:   3'- -AUGUUGUaCGCCGUau-GGA-UGCGgUG- -5'
26623 3' -52.4 NC_005357.1 + 13622 0.66 0.762995
Target:  5'- gACAGCAUcgguaGCGGCAgcaaguCCgGCGCgGCc -3'
miRNA:   3'- aUGUUGUA-----CGCCGUau----GGaUGCGgUG- -5'
26623 3' -52.4 NC_005357.1 + 13854 0.67 0.672721
Target:  5'- cGCuGCcgGUGGCcgACgUgcGCGCCGCg -3'
miRNA:   3'- aUGuUGuaCGCCGuaUGgA--UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 14212 0.66 0.716363
Target:  5'- cGCGugGUcgucggcGUGGCcgACCUggacaagGCGCCGCa -3'
miRNA:   3'- aUGUugUA-------CGCCGuaUGGA-------UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 14349 0.68 0.63779
Target:  5'- aUACGACGccGCGGCc-ACCUGC-CCGCu -3'
miRNA:   3'- -AUGUUGUa-CGCCGuaUGGAUGcGGUG- -5'
26623 3' -52.4 NC_005357.1 + 14586 0.75 0.28432
Target:  5'- cUugAGCA-GCGGCGcgGCCgGCGCCACc -3'
miRNA:   3'- -AugUUGUaCGCCGUa-UGGaUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 14718 0.67 0.707263
Target:  5'- cAUGACcgGCGGCGaGCCgcUGCCGg -3'
miRNA:   3'- aUGUUGuaCGCCGUaUGGauGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 14767 0.66 0.773743
Target:  5'- cGCAGCGUGuCGGUGUcgAUCUGCuUCACg -3'
miRNA:   3'- aUGUUGUAC-GCCGUA--UGGAUGcGGUG- -5'
26623 3' -52.4 NC_005357.1 + 14970 0.77 0.198652
Target:  5'- gGCGGCGcGCuGGCAUACCaGCGCCAg -3'
miRNA:   3'- aUGUUGUaCG-CCGUAUGGaUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 16850 0.66 0.74106
Target:  5'- gGCcGCAgaccGCGGCGUACaacuccgACGCCGa -3'
miRNA:   3'- aUGuUGUa---CGCCGUAUGga-----UGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 17638 0.68 0.63779
Target:  5'- cGCAuCGUGCGGCAg---UACGgCCACg -3'
miRNA:   3'- aUGUuGUACGCCGUauggAUGC-GGUG- -5'
26623 3' -52.4 NC_005357.1 + 18465 0.67 0.695814
Target:  5'- cGCGGCGccgGCGGCGUcgGCCgauuCGuCCACc -3'
miRNA:   3'- aUGUUGUa--CGCCGUA--UGGau--GC-GGUG- -5'
26623 3' -52.4 NC_005357.1 + 19856 0.73 0.368354
Target:  5'- aGCAGCGUGgugaguucgGGCGUGCCgaagGCGUCGCg -3'
miRNA:   3'- aUGUUGUACg--------CCGUAUGGa---UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 20736 0.69 0.556598
Target:  5'- -cCGACAUGCugcuGGCGccguagagGCgCUGCGCCGCg -3'
miRNA:   3'- auGUUGUACG----CCGUa-------UG-GAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 21453 0.67 0.672721
Target:  5'- cUGCGGCGgggGCGGCAggauguugGCCU-CGaCCAUg -3'
miRNA:   3'- -AUGUUGUa--CGCCGUa-------UGGAuGC-GGUG- -5'
26623 3' -52.4 NC_005357.1 + 21705 0.66 0.737724
Target:  5'- aGCAGCAUGuCGGCcugauggggugcccGUGCCU-CGUCGu -3'
miRNA:   3'- aUGUUGUAC-GCCG--------------UAUGGAuGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 21993 0.67 0.672721
Target:  5'- cGCAGCGUGCGGguU-UCgucgGCGCCu- -3'
miRNA:   3'- aUGUUGUACGCCguAuGGa---UGCGGug -5'
26623 3' -52.4 NC_005357.1 + 22311 0.66 0.752096
Target:  5'- gGCAGCAcgaugcUGCuGGcCGUGCCgaacGCGCCGa -3'
miRNA:   3'- aUGUUGU------ACG-CC-GUAUGGa---UGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.