miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26623 3' -52.4 NC_005357.1 + 210 0.68 0.649456
Target:  5'- aGCAuCAUgGUGGCGUAggUAUGCCGCa -3'
miRNA:   3'- aUGUuGUA-CGCCGUAUggAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 1039 0.71 0.457335
Target:  5'- cACGGCcgGCGGCA-GCauguCGCCGCg -3'
miRNA:   3'- aUGUUGuaCGCCGUaUGgau-GCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 1080 0.66 0.762995
Target:  5'- aAC-GCGcGCGGUAgauUGCCUugGCCGu -3'
miRNA:   3'- aUGuUGUaCGCCGU---AUGGAugCGGUg -5'
26623 3' -52.4 NC_005357.1 + 1747 0.66 0.74106
Target:  5'- aACAcCggGCGGuCAUggccgGCCUGCGCCugGCg -3'
miRNA:   3'- aUGUuGuaCGCC-GUA-----UGGAUGCGG--UG- -5'
26623 3' -52.4 NC_005357.1 + 2135 0.66 0.773743
Target:  5'- gUGCAGCAgcCGGUcaACC-GCGCCGCc -3'
miRNA:   3'- -AUGUUGUacGCCGuaUGGaUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 2426 0.73 0.359226
Target:  5'- gUACGGCA-GCaGGCcgGCCUcgaagaucgGCGCCACg -3'
miRNA:   3'- -AUGUUGUaCG-CCGuaUGGA---------UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 3532 0.66 0.74106
Target:  5'- aGCGACGUGCcGUu--CCagGCGCCGCc -3'
miRNA:   3'- aUGUUGUACGcCGuauGGa-UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 4047 0.66 0.752096
Target:  5'- cGCGGCGaGCGGCAgGCCaGCgGCC-Ca -3'
miRNA:   3'- aUGUUGUaCGCCGUaUGGaUG-CGGuG- -5'
26623 3' -52.4 NC_005357.1 + 4410 0.7 0.478636
Target:  5'- cUugAGCGUGCGGCAgucguaggucgUACCcg-GCCGCa -3'
miRNA:   3'- -AugUUGUACGCCGU-----------AUGGaugCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 5441 0.66 0.718629
Target:  5'- gGCGGCGUGggcgagguCGGUAUcgACCaucACGCCGCg -3'
miRNA:   3'- aUGUUGUAC--------GCCGUA--UGGa--UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 7209 0.7 0.500414
Target:  5'- cGCGAUGUccaCGGCAgcAUCUGCGCCGCg -3'
miRNA:   3'- aUGUUGUAc--GCCGUa-UGGAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 7537 0.71 0.467923
Target:  5'- gUGCGcUcgGCGGCGUGCUcgauccgcgGCGCCACc -3'
miRNA:   3'- -AUGUuGuaCGCCGUAUGGa--------UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 7764 0.69 0.568072
Target:  5'- uUGCAGCAc-CGGCGcgAUCUGCGCCGg -3'
miRNA:   3'- -AUGUUGUacGCCGUa-UGGAUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 8000 0.69 0.579604
Target:  5'- cACGGCGU-CGGaCGUGCCcuugGCGCCAg -3'
miRNA:   3'- aUGUUGUAcGCC-GUAUGGa---UGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 8208 0.66 0.752096
Target:  5'- aGCGACAUgGCGGCcaguuCgUGCGCgGCc -3'
miRNA:   3'- aUGUUGUA-CGCCGuau--GgAUGCGgUG- -5'
26623 3' -52.4 NC_005357.1 + 8339 0.68 0.602805
Target:  5'- uUGC-GCGUGCGuGCucaugccaGUACCUccuGCGCCGCc -3'
miRNA:   3'- -AUGuUGUACGC-CG--------UAUGGA---UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 8452 0.66 0.717497
Target:  5'- cGCGAUGU-CGGCGUcgaggugGCCUGCgauGCCGCa -3'
miRNA:   3'- aUGUUGUAcGCCGUA-------UGGAUG---CGGUG- -5'
26623 3' -52.4 NC_005357.1 + 8778 0.66 0.727654
Target:  5'- gGCAGCAcGCGGCGcacgaugggucgGCC-GCGCCGg -3'
miRNA:   3'- aUGUUGUaCGCCGUa-----------UGGaUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 9232 0.66 0.773743
Target:  5'- cGCGAUAgccaGCGGUggccGUGCCgaggGCGcCCACu -3'
miRNA:   3'- aUGUUGUa---CGCCG----UAUGGa---UGC-GGUG- -5'
26623 3' -52.4 NC_005357.1 + 10791 0.67 0.695814
Target:  5'- aGCGGCA--CGGUAUGCCUugaggcccUGCCACg -3'
miRNA:   3'- aUGUUGUacGCCGUAUGGAu-------GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.