miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26623 3' -52.4 NC_005357.1 + 23747 0.76 0.235014
Target:  5'- cGCAGCA-GCGcCAUGCCgGCGCCACc -3'
miRNA:   3'- aUGUUGUaCGCcGUAUGGaUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 30081 0.67 0.661104
Target:  5'- -----uGUGCGGC--GCCcggGCGCCACg -3'
miRNA:   3'- auguugUACGCCGuaUGGa--UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 11130 0.68 0.63779
Target:  5'- --aAACGUGCGaGCAguucgGCCUGCugcuggGCCGCc -3'
miRNA:   3'- augUUGUACGC-CGUa----UGGAUG------CGGUG- -5'
26623 3' -52.4 NC_005357.1 + 17638 0.68 0.63779
Target:  5'- cGCAuCGUGCGGCAg---UACGgCCACg -3'
miRNA:   3'- aUGUuGUACGCCGUauggAUGC-GGUG- -5'
26623 3' -52.4 NC_005357.1 + 37074 0.68 0.614453
Target:  5'- cGCGguGCAgGCGGCcacgcagcgcgAUGCCaugcUGCGCCACg -3'
miRNA:   3'- aUGU--UGUaCGCCG-----------UAUGG----AUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 32900 0.68 0.602805
Target:  5'- gACAACAagaacUGCGGCcacgGCCUGCacgGCUGCu -3'
miRNA:   3'- aUGUUGU-----ACGCCGua--UGGAUG---CGGUG- -5'
26623 3' -52.4 NC_005357.1 + 7764 0.69 0.568072
Target:  5'- uUGCAGCAc-CGGCGcgAUCUGCGCCGg -3'
miRNA:   3'- -AUGUUGUacGCCGUa-UGGAUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 31626 0.69 0.565772
Target:  5'- cGCAGCGUGgcagggccucaaGGCAUACCgu-GCCGCu -3'
miRNA:   3'- aUGUUGUACg-----------CCGUAUGGaugCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 20736 0.69 0.556598
Target:  5'- -cCGACAUGCugcuGGCGccguagagGCgCUGCGCCGCg -3'
miRNA:   3'- auGUUGUACG----CCGUa-------UG-GAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 39842 0.69 0.545192
Target:  5'- uUGCAACAggGCGGCAaGCgcGCGCaCGCg -3'
miRNA:   3'- -AUGUUGUa-CGCCGUaUGgaUGCG-GUG- -5'
26623 3' -52.4 NC_005357.1 + 36245 0.7 0.511466
Target:  5'- cUGCaAACGcUGCGGCAagaccgGCCUGCGCUg- -3'
miRNA:   3'- -AUG-UUGU-ACGCCGUa-----UGGAUGCGGug -5'
26623 3' -52.4 NC_005357.1 + 7209 0.7 0.500414
Target:  5'- cGCGAUGUccaCGGCAgcAUCUGCGCCGCg -3'
miRNA:   3'- aUGUUGUAc--GCCGUa-UGGAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 35961 0.7 0.489469
Target:  5'- cGCGGCGUGCaGUu--CCUGCGCgACg -3'
miRNA:   3'- aUGUUGUACGcCGuauGGAUGCGgUG- -5'
26623 3' -52.4 NC_005357.1 + 1039 0.71 0.457335
Target:  5'- cACGGCcgGCGGCA-GCauguCGCCGCg -3'
miRNA:   3'- aUGUUGuaCGCCGUaUGgau-GCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 23262 0.71 0.425355
Target:  5'- aACAGCAUGgucagguCGGUGUcgGCgUGCGCCACg -3'
miRNA:   3'- aUGUUGUAC-------GCCGUA--UGgAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 33893 0.72 0.387082
Target:  5'- cGCGGC-UGuCGaGCGUuucaucGCCUACGCCACg -3'
miRNA:   3'- aUGUUGuAC-GC-CGUA------UGGAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 19856 0.73 0.368354
Target:  5'- aGCAGCGUGgugaguucgGGCGUGCCgaagGCGUCGCg -3'
miRNA:   3'- aUGUUGUACg--------CCGUAUGGa---UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 2426 0.73 0.359226
Target:  5'- gUACGGCA-GCaGGCcgGCCUcgaagaucgGCGCCACg -3'
miRNA:   3'- -AUGUUGUaCG-CCGuaUGGA---------UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 24472 0.73 0.341449
Target:  5'- gACGACcUGCuGCuugGCCUGCGCCAg -3'
miRNA:   3'- aUGUUGuACGcCGua-UGGAUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 42207 1.07 0.001472
Target:  5'- cUACAACAUGCGGCAUACCUACGCCACc -3'
miRNA:   3'- -AUGUUGUACGCCGUAUGGAUGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.